Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0625 and SMa0626 are separated by 522 nucleotides SMa0626 and SMa0627 are separated by 386 nucleotides
SMa0625: SMa0625 - hypothetical protein, at 334,433 to 334,594
SMa0625
SMa0626: SMa0626 - hypothetical protein, at 335,117 to 336,379
SMa0626
SMa0627: SMa0627 - aquaporin Z, at 336,766 to 337,464
SMa0627
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 334.346 kb on - strand at 334.351 kb on + strand at 334.400 kb on + strand at 334.400 kb on + strand at 334.642 kb on + strand at 334.642 kb on + strand at 334.642 kb on + strand at 334.666 kb on + strand at 334.667 kb on - strand at 334.707 kb on + strand at 334.708 kb on - strand at 334.737 kb on + strand at 334.795 kb on + strand at 334.817 kb on + strand at 334.859 kb on - strand at 334.890 kb on + strand at 334.893 kb on + strand at 334.894 kb on - strand at 334.894 kb on - strand at 334.996 kb on + strand at 335.197 kb on - strand at 335.251 kb on + strand, within SMa0626 at 335.298 kb on - strand, within SMa0626 at 335.358 kb on + strand, within SMa0626 at 335.359 kb on - strand, within SMa0626 at 335.416 kb on + strand, within SMa0626 at 335.416 kb on + strand, within SMa0626 at 335.416 kb on + strand, within SMa0626 at 335.418 kb on + strand, within SMa0626 at 335.419 kb on - strand, within SMa0626 at 335.611 kb on + strand, within SMa0626 at 335.760 kb on + strand, within SMa0626 at 335.760 kb on + strand, within SMa0626 at 335.761 kb on - strand, within SMa0626 at 335.761 kb on - strand, within SMa0626 at 335.761 kb on - strand, within SMa0626 at 335.928 kb on - strand, within SMa0626 at 335.987 kb on + strand, within SMa0626 at 336.042 kb on + strand, within SMa0626 at 336.043 kb on - strand, within SMa0626 at 336.043 kb on - strand, within SMa0626 at 336.190 kb on + strand, within SMa0626 at 336.191 kb on - strand, within SMa0626 at 336.191 kb on - strand, within SMa0626 at 336.191 kb on - strand, within SMa0626 at 336.263 kb on - strand at 336.331 kb on + strand at 336.522 kb on + strand at 336.523 kb on - strand at 336.575 kb on - strand at 336.577 kb on - strand at 336.577 kb on - strand at 336.577 kb on - strand at 336.583 kb on + strand at 336.704 kb on + strand at 336.730 kb on + strand at 336.736 kb on - strand at 336.920 kb on - strand, within SMa0627 at 336.921 kb on + strand, within SMa0627 at 336.921 kb on + strand, within SMa0627 at 336.922 kb on - strand, within SMa0627 at 336.922 kb on - strand, within SMa0627 at 336.922 kb on - strand, within SMa0627 at 337.016 kb on - strand, within SMa0627 at 337.063 kb on + strand, within SMa0627 at 337.064 kb on - strand, within SMa0627 at 337.064 kb on - strand, within SMa0627 at 337.305 kb on + strand, within SMa0627
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 334,346 - -0.3 334,351 + +0.8 334,400 + +0.8 334,400 + -0.1 334,642 + -0.6 334,642 + -0.5 334,642 + -0.9 334,666 + +0.1 334,667 - +0.3 334,707 + -0.3 334,708 - +0.0 334,737 + +0.8 334,795 + -2.2 334,817 + +1.9 334,859 - -0.2 334,890 + -0.3 334,893 + -0.3 334,894 - +0.0 334,894 - +0.1 334,996 + -0.4 335,197 - -0.0 335,251 + SMa0626 0.11 +3.0 335,298 - SMa0626 0.14 -0.1 335,358 + SMa0626 0.19 -1.5 335,359 - SMa0626 0.19 -0.1 335,416 + SMa0626 0.24 -0.0 335,416 + SMa0626 0.24 -1.3 335,416 + SMa0626 0.24 +0.3 335,418 + SMa0626 0.24 +0.0 335,419 - SMa0626 0.24 +0.4 335,611 + SMa0626 0.39 +0.1 335,760 + SMa0626 0.51 -0.3 335,760 + SMa0626 0.51 +1.7 335,761 - SMa0626 0.51 +0.3 335,761 - SMa0626 0.51 -0.3 335,761 - SMa0626 0.51 +0.8 335,928 - SMa0626 0.64 -0.4 335,987 + SMa0626 0.69 +1.7 336,042 + SMa0626 0.73 +0.9 336,043 - SMa0626 0.73 -0.0 336,043 - SMa0626 0.73 +0.2 336,190 + SMa0626 0.85 +1.0 336,191 - SMa0626 0.85 +0.2 336,191 - SMa0626 0.85 -0.5 336,191 - SMa0626 0.85 -0.3 336,263 - +0.1 336,331 + -0.1 336,522 + -0.1 336,523 - -0.7 336,575 - +1.2 336,577 - -0.2 336,577 - -0.3 336,577 - -0.2 336,583 + -1.3 336,704 + -0.2 336,730 + +0.4 336,736 - +0.1 336,920 - SMa0627 0.22 +0.1 336,921 + SMa0627 0.22 -0.4 336,921 + SMa0627 0.22 -0.6 336,922 - SMa0627 0.22 -0.4 336,922 - SMa0627 0.22 -0.9 336,922 - SMa0627 0.22 +0.3 337,016 - SMa0627 0.36 -2.5 337,063 + SMa0627 0.42 +0.1 337,064 - SMa0627 0.43 -0.7 337,064 - SMa0627 0.43 -0.5 337,305 + SMa0627 0.77 -0.7
Or see this region's nucleotide sequence