Strain Fitness in Sinorhizobium meliloti 1021 around SMa0554

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0551 and SMa0552 are separated by 92 nucleotidesSMa0552 and SMa0554 overlap by 23 nucleotidesSMa0554 and SMa0557 are separated by 718 nucleotides SMa0551: SMa0551 - N-ethylammeline chlorohydrolase, at 292,217 to 293,509 SMa0551 SMa0552: SMa0552 - cyclic amidohydrolase, at 293,602 to 294,093 SMa0552 SMa0554: SMa0554 - hypothetical protein, at 294,071 to 294,868 SMa0554 SMa0557: SMa0557 - LysR family transcriptional regulator, at 295,587 to 296,474 SMa0557 Position (kb) 294 295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 293.077 kb on + strand, within SMa0551at 293.078 kb on - strand, within SMa0551at 293.080 kb on + strand, within SMa0551at 293.100 kb on + strand, within SMa0551at 293.101 kb on - strand, within SMa0551at 293.101 kb on - strand, within SMa0551at 293.101 kb on - strand, within SMa0551at 293.151 kb on - strand, within SMa0551at 293.292 kb on + strand, within SMa0551at 293.446 kb on + strandat 293.447 kb on - strandat 293.447 kb on - strandat 293.489 kb on + strandat 293.489 kb on + strandat 293.489 kb on + strandat 293.489 kb on + strandat 293.490 kb on - strandat 293.490 kb on - strandat 293.559 kb on + strandat 293.595 kb on + strandat 293.595 kb on + strandat 293.596 kb on - strandat 293.596 kb on - strandat 293.601 kb on + strandat 293.602 kb on - strandat 293.602 kb on - strandat 293.602 kb on - strandat 293.702 kb on + strand, within SMa0552at 293.736 kb on + strand, within SMa0552at 293.955 kb on + strand, within SMa0552at 293.963 kb on - strand, within SMa0552at 293.996 kb on + strand, within SMa0552at 293.997 kb on - strand, within SMa0552at 293.997 kb on - strand, within SMa0552at 293.997 kb on - strand, within SMa0552at 293.997 kb on - strand, within SMa0552at 294.057 kb on + strandat 294.058 kb on - strandat 294.058 kb on - strandat 294.222 kb on - strand, within SMa0554at 294.222 kb on - strand, within SMa0554at 294.222 kb on - strand, within SMa0554at 294.222 kb on - strand, within SMa0554at 294.233 kb on + strand, within SMa0554at 294.259 kb on - strand, within SMa0554at 294.259 kb on - strand, within SMa0554at 294.293 kb on + strand, within SMa0554at 294.399 kb on - strand, within SMa0554at 294.425 kb on + strand, within SMa0554at 294.426 kb on - strand, within SMa0554at 294.542 kb on + strand, within SMa0554at 294.569 kb on + strand, within SMa0554at 294.570 kb on - strand, within SMa0554at 294.570 kb on - strand, within SMa0554at 294.593 kb on - strand, within SMa0554at 294.627 kb on - strand, within SMa0554at 294.730 kb on - strand, within SMa0554at 294.774 kb on + strand, within SMa0554at 294.922 kb on - strandat 294.922 kb on - strandat 294.934 kb on + strandat 294.943 kb on + strandat 294.944 kb on - strandat 295.050 kb on - strandat 295.163 kb on + strandat 295.219 kb on + strandat 295.220 kb on - strandat 295.220 kb on - strandat 295.248 kb on - strandat 295.253 kb on - strandat 295.253 kb on - strandat 295.253 kb on - strandat 295.299 kb on + strandat 295.300 kb on - strandat 295.300 kb on - strandat 295.301 kb on + strandat 295.301 kb on + strandat 295.301 kb on + strandat 295.301 kb on + strandat 295.302 kb on - strandat 295.302 kb on - strandat 295.303 kb on + strandat 295.303 kb on + strandat 295.304 kb on - strandat 295.304 kb on - strandat 295.360 kb on - strandat 295.360 kb on - strandat 295.368 kb on - strandat 295.492 kb on - strandat 295.543 kb on + strandat 295.543 kb on + strandat 295.543 kb on + strandat 295.544 kb on - strandat 295.544 kb on - strandat 295.651 kb on + strandat 295.652 kb on - strandat 295.652 kb on - strandat 295.689 kb on + strand, within SMa0557at 295.720 kb on + strand, within SMa0557at 295.748 kb on - strand, within SMa0557at 295.864 kb on + strand, within SMa0557at 295.864 kb on + strand, within SMa0557

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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293,077 + SMa0551 0.67 +1.9
293,078 - SMa0551 0.67 -1.6
293,080 + SMa0551 0.67 +0.0
293,100 + SMa0551 0.68 +0.3
293,101 - SMa0551 0.68 -1.1
293,101 - SMa0551 0.68 -0.5
293,101 - SMa0551 0.68 -0.9
293,151 - SMa0551 0.72 -0.2
293,292 + SMa0551 0.83 +0.7
293,446 + +0.5
293,447 - +0.4
293,447 - +0.6
293,489 + +0.5
293,489 + -1.5
293,489 + +0.2
293,489 + -1.5
293,490 - -0.1
293,490 - +0.3
293,559 + -0.1
293,595 + +0.1
293,595 + -0.3
293,596 - -0.5
293,596 - +1.0
293,601 + -0.5
293,602 - -0.6
293,602 - +0.5
293,602 - +3.0
293,702 + SMa0552 0.20 +0.3
293,736 + SMa0552 0.27 +1.4
293,955 + SMa0552 0.72 -0.2
293,963 - SMa0552 0.73 -0.1
293,996 + SMa0552 0.80 -0.5
293,997 - SMa0552 0.80 +0.1
293,997 - SMa0552 0.80 -0.1
293,997 - SMa0552 0.80 -0.2
293,997 - SMa0552 0.80 -0.6
294,057 + +0.4
294,058 - -0.5
294,058 - +2.3
294,222 - SMa0554 0.19 -0.4
294,222 - SMa0554 0.19 -1.4
294,222 - SMa0554 0.19 -0.2
294,222 - SMa0554 0.19 -0.6
294,233 + SMa0554 0.20 -0.9
294,259 - SMa0554 0.24 -0.3
294,259 - SMa0554 0.24 -2.1
294,293 + SMa0554 0.28 -0.2
294,399 - SMa0554 0.41 -0.6
294,425 + SMa0554 0.44 -0.4
294,426 - SMa0554 0.44 +0.1
294,542 + SMa0554 0.59 +0.3
294,569 + SMa0554 0.62 +1.3
294,570 - SMa0554 0.63 -1.2
294,570 - SMa0554 0.63 -1.0
294,593 - SMa0554 0.65 -0.1
294,627 - SMa0554 0.70 -0.9
294,730 - SMa0554 0.83 -1.3
294,774 + SMa0554 0.88 -0.4
294,922 - -0.2
294,922 - +0.3
294,934 + -0.5
294,943 + -0.1
294,944 - -0.6
295,050 - -0.3
295,163 + -0.2
295,219 + +0.1
295,220 - -0.1
295,220 - +0.2
295,248 - +0.5
295,253 - +0.3
295,253 - +0.7
295,253 - -0.4
295,299 + -0.0
295,300 - +0.2
295,300 - -0.3
295,301 + -0.2
295,301 + +0.1
295,301 + -2.0
295,301 + +0.4
295,302 - +0.0
295,302 - -0.2
295,303 + -1.4
295,303 + -0.3
295,304 - +0.1
295,304 - +0.9
295,360 - -0.2
295,360 - -0.5
295,368 - -0.7
295,492 - +0.8
295,543 + -0.5
295,543 + -0.7
295,543 + +0.4
295,544 - +0.2
295,544 - +0.6
295,651 + -0.0
295,652 - -0.4
295,652 - -0.3
295,689 + SMa0557 0.11 +1.3
295,720 + SMa0557 0.15 +0.7
295,748 - SMa0557 0.18 -1.0
295,864 + SMa0557 0.31 +0.3
295,864 + SMa0557 0.31 +0.0

Or see this region's nucleotide sequence