Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0503 and SMa0506 are separated by 57 nucleotides SMa0506 and SMa0508 are separated by 49 nucleotides SMa0508 and SMa0510 are separated by 72 nucleotides
SMa0503: SMa0503 - ABC transporter permease, at 273,422 to 274,078
SMa0503
SMa0506: SMa0506 - ABC transporter periplasmic substrate-binding protein, at 274,136 to 274,933
SMa0506
SMa0508: SMa0508 - ABC transporter ATP-binding protein, at 274,983 to 275,714
SMa0508
SMa0510: SMa0510 - D-isomer specific 2-hydroxyacid dehydrogenase, at 275,787 to 276,734
SMa0510
Position (kb) 274
275
276 Strain fitness (log2 ratio) -2
-1
0
1 at 273.998 kb on + strand, within SMa0503 at 273.998 kb on + strand, within SMa0503 at 274.234 kb on + strand, within SMa0506 at 274.454 kb on + strand, within SMa0506 at 274.493 kb on + strand, within SMa0506 at 274.494 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.776 kb on - strand, within SMa0506 at 274.789 kb on - strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 275.047 kb on + strand at 275.244 kb on + strand, within SMa0508 at 275.245 kb on - strand, within SMa0508 at 275.245 kb on - strand, within SMa0508 at 275.386 kb on - strand, within SMa0508 at 275.708 kb on - strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.804 kb on - strand at 275.804 kb on - strand at 276.018 kb on + strand, within SMa0510 at 276.018 kb on + strand, within SMa0510 at 276.019 kb on - strand, within SMa0510 at 276.019 kb on - strand, within SMa0510 at 276.196 kb on - strand, within SMa0510 at 276.303 kb on + strand, within SMa0510 at 276.304 kb on - strand, within SMa0510 at 276.426 kb on - strand, within SMa0510
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 273,998 + SMa0503 0.88 -0.3 273,998 + SMa0503 0.88 +0.6 274,234 + SMa0506 0.12 +0.1 274,454 + SMa0506 0.40 -1.8 274,493 + SMa0506 0.45 -0.1 274,494 - SMa0506 0.45 +0.7 274,716 - SMa0506 0.73 +0.1 274,716 - SMa0506 0.73 -0.4 274,716 - SMa0506 0.73 -0.1 274,776 - SMa0506 0.80 +0.3 274,789 - SMa0506 0.82 +0.1 274,790 + SMa0506 0.82 -0.7 274,790 + SMa0506 0.82 -1.8 275,047 + -0.8 275,244 + SMa0508 0.36 -1.2 275,245 - SMa0508 0.36 +1.2 275,245 - SMa0508 0.36 -1.0 275,386 - SMa0508 0.55 -0.5 275,708 - -0.1 275,803 + -0.3 275,803 + +0.3 275,803 + -0.1 275,804 - -0.1 275,804 - +0.1 276,018 + SMa0510 0.24 +0.1 276,018 + SMa0510 0.24 -0.0 276,019 - SMa0510 0.24 +0.1 276,019 - SMa0510 0.24 -0.1 276,196 - SMa0510 0.43 -0.3 276,303 + SMa0510 0.54 +0.0 276,304 - SMa0510 0.55 -0.2 276,426 - SMa0510 0.67 -1.2
Or see this region's nucleotide sequence