Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5020 and SMa0421 overlap by 13 nucleotides SMa0421 and SMa5021 overlap by 4 nucleotides SMa5021 and SMa0424 are separated by 34 nucleotides SMa0424 and SMa0426 overlap by 4 nucleotides
SMa5020: SMa5020 - hypothetical protein, at 227,425 to 228,318
SMa5020
SMa0421: SMa0421 - hypothetical protein, at 228,306 to 228,824
SMa0421
SMa5021: SMa5021 - hypothetical protein, at 228,821 to 229,255
SMa5021
SMa0424: SMa0424 - ATP-dependent DNA ligase, at 229,290 to 230,330
SMa0424
SMa0426: SMa0426 - hypothetical protein, at 230,327 to 231,133
SMa0426
Position (kb) 229
230
231 Strain fitness (log2 ratio) -2
-1
0
1 at 228.612 kb on + strand, within SMa0421 at 228.699 kb on + strand, within SMa0421 at 228.699 kb on + strand, within SMa0421 at 228.700 kb on - strand, within SMa0421 at 228.700 kb on - strand, within SMa0421 at 228.789 kb on + strand at 228.790 kb on - strand at 228.848 kb on + strand at 228.849 kb on - strand at 228.849 kb on - strand at 228.973 kb on - strand, within SMa5021 at 228.991 kb on - strand, within SMa5021 at 229.042 kb on + strand, within SMa5021 at 229.042 kb on + strand, within SMa5021 at 229.208 kb on + strand, within SMa5021 at 229.210 kb on + strand, within SMa5021 at 229.223 kb on - strand at 229.357 kb on + strand at 229.357 kb on + strand at 229.469 kb on + strand, within SMa0424 at 229.469 kb on + strand, within SMa0424 at 229.470 kb on - strand, within SMa0424 at 229.520 kb on + strand, within SMa0424 at 229.524 kb on - strand, within SMa0424 at 229.662 kb on + strand, within SMa0424 at 229.882 kb on + strand, within SMa0424 at 230.598 kb on + strand, within SMa0426 at 230.599 kb on - strand, within SMa0426 at 230.599 kb on - strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.797 kb on - strand, within SMa0426 at 230.797 kb on - strand, within SMa0426 at 230.803 kb on + strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.822 kb on + strand, within SMa0426 at 230.822 kb on + strand, within SMa0426 at 230.823 kb on - strand, within SMa0426 at 230.934 kb on + strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 231.029 kb on - strand, within SMa0426 at 231.029 kb on - strand, within SMa0426 at 231.105 kb on + strand at 231.106 kb on - strand at 231.263 kb on + strand at 231.263 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 228,612 + SMa0421 0.59 -0.1 228,699 + SMa0421 0.76 -0.5 228,699 + SMa0421 0.76 -0.5 228,700 - SMa0421 0.76 +0.5 228,700 - SMa0421 0.76 -0.1 228,789 + +0.2 228,790 - +0.4 228,848 + -0.3 228,849 - +0.4 228,849 - +1.0 228,973 - SMa5021 0.35 -2.0 228,991 - SMa5021 0.39 +0.6 229,042 + SMa5021 0.51 -0.6 229,042 + SMa5021 0.51 -0.8 229,208 + SMa5021 0.89 +0.5 229,210 + SMa5021 0.89 -0.0 229,223 - +1.1 229,357 + -0.3 229,357 + +0.4 229,469 + SMa0424 0.17 +0.5 229,469 + SMa0424 0.17 -0.6 229,470 - SMa0424 0.17 -0.0 229,520 + SMa0424 0.22 -2.0 229,524 - SMa0424 0.22 -1.1 229,662 + SMa0424 0.36 -0.7 229,882 + SMa0424 0.57 -2.1 230,598 + SMa0426 0.34 -0.1 230,599 - SMa0426 0.34 +1.7 230,599 - SMa0426 0.34 -0.0 230,796 + SMa0426 0.58 +0.3 230,796 + SMa0426 0.58 -0.6 230,796 + SMa0426 0.58 -0.8 230,797 - SMa0426 0.58 -0.2 230,797 - SMa0426 0.58 +0.1 230,803 + SMa0426 0.59 -0.1 230,804 - SMa0426 0.59 +0.1 230,804 - SMa0426 0.59 +0.0 230,804 - SMa0426 0.59 -0.9 230,822 + SMa0426 0.61 +0.1 230,822 + SMa0426 0.61 -0.4 230,823 - SMa0426 0.61 -0.0 230,934 + SMa0426 0.75 +1.1 230,989 - SMa0426 0.82 +0.1 230,989 - SMa0426 0.82 +0.1 230,989 - SMa0426 0.82 +0.5 231,029 - SMa0426 0.87 +0.1 231,029 - SMa0426 0.87 -0.3 231,105 + -0.0 231,106 - -0.9 231,263 + +0.5 231,263 + -0.1
Or see this region's nucleotide sequence