Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0312 and SMa0314 overlap by 4 nucleotides SMa0314 and SMa0316 are separated by 82 nucleotides SMa0316 and SMa0319 are separated by 503 nucleotides
SMa0312: SMa0312 - hypothetical protein, at 175,343 to 175,876
SMa0312
SMa0314: SMa0314 - hypothetical protein, at 175,873 to 176,124
SMa0314
SMa0316: SMa0316 - hypothetical protein, at 176,207 to 177,469
SMa0316
SMa0319: SMa0319 - AraC family transcriptional regulator, at 177,973 to 178,974
SMa0319
Position (kb) 176
177
178 Strain fitness (log2 ratio) -1
0
1 at 175.238 kb on - strand at 175.384 kb on + strand at 175.385 kb on - strand at 175.385 kb on - strand at 175.508 kb on + strand, within SMa0312 at 175.508 kb on + strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.900 kb on + strand, within SMa0314 at 176.009 kb on - strand, within SMa0314 at 176.046 kb on + strand, within SMa0314 at 176.047 kb on - strand, within SMa0314 at 176.149 kb on - strand at 176.222 kb on - strand at 176.222 kb on - strand at 176.222 kb on - strand at 176.378 kb on + strand, within SMa0316 at 176.674 kb on + strand, within SMa0316 at 176.740 kb on + strand, within SMa0316 at 176.741 kb on - strand, within SMa0316 at 176.741 kb on - strand, within SMa0316 at 176.855 kb on - strand, within SMa0316 at 176.855 kb on - strand, within SMa0316 at 177.145 kb on + strand, within SMa0316 at 177.290 kb on - strand, within SMa0316 at 177.395 kb on - strand at 177.454 kb on + strand at 177.455 kb on - strand at 177.705 kb on - strand at 177.772 kb on + strand at 177.777 kb on - strand at 177.777 kb on - strand at 177.777 kb on - strand at 177.833 kb on + strand at 177.910 kb on + strand at 177.911 kb on - strand at 177.930 kb on + strand at 177.958 kb on - strand at 178.039 kb on - strand at 178.077 kb on + strand, within SMa0319 at 178.120 kb on + strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.124 kb on + strand, within SMa0319 at 178.358 kb on - strand, within SMa0319 at 178.358 kb on - strand, within SMa0319 at 178.412 kb on - strand, within SMa0319 at 178.444 kb on + strand, within SMa0319 at 178.445 kb on - strand, within SMa0319 at 178.445 kb on - strand, within SMa0319 at 178.454 kb on + strand, within SMa0319 at 178.455 kb on - strand, within SMa0319
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 175,238 - +0.3 175,384 + +0.1 175,385 - -0.4 175,385 - +0.5 175,508 + SMa0312 0.31 +0.2 175,508 + SMa0312 0.31 +0.4 175,509 - SMa0312 0.31 -1.0 175,509 - SMa0312 0.31 +1.2 175,900 + SMa0314 0.11 +0.3 176,009 - SMa0314 0.54 -0.0 176,046 + SMa0314 0.69 +0.6 176,047 - SMa0314 0.69 -0.6 176,149 - -0.6 176,222 - +0.0 176,222 - -0.7 176,222 - +0.5 176,378 + SMa0316 0.14 -0.3 176,674 + SMa0316 0.37 +0.4 176,740 + SMa0316 0.42 -0.5 176,741 - SMa0316 0.42 +0.4 176,741 - SMa0316 0.42 -0.9 176,855 - SMa0316 0.51 +0.3 176,855 - SMa0316 0.51 -0.3 177,145 + SMa0316 0.74 +1.3 177,290 - SMa0316 0.86 +0.8 177,395 - -0.4 177,454 + -0.5 177,455 - -1.0 177,705 - +0.3 177,772 + +0.3 177,777 - +0.2 177,777 - +0.3 177,777 - -0.6 177,833 + -0.2 177,910 + +0.4 177,911 - -1.1 177,930 + -0.4 177,958 - -0.6 178,039 - -0.9 178,077 + SMa0319 0.10 +0.4 178,120 + SMa0319 0.15 +0.2 178,121 - SMa0319 0.15 +0.3 178,121 - SMa0319 0.15 -0.4 178,121 - SMa0319 0.15 -1.1 178,124 + SMa0319 0.15 +0.2 178,358 - SMa0319 0.38 -0.2 178,358 - SMa0319 0.38 -0.8 178,412 - SMa0319 0.44 -0.3 178,444 + SMa0319 0.47 -0.5 178,445 - SMa0319 0.47 -0.8 178,445 - SMa0319 0.47 +0.9 178,454 + SMa0319 0.48 +0.9 178,455 - SMa0319 0.48 +0.4
Or see this region's nucleotide sequence