Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0235 and SMa0237 are separated by 8 nucleotides SMa0237 and SMa0241 overlap by 4 nucleotides SMa0241 and SMa0244 are separated by 194 nucleotides
SMa0235: SMa0235 - dihydroxy-acid dehydratase, at 131,106 to 132,884
SMa0235
SMa0237: SMa0237 - dehydrogenase, at 132,893 to 133,774
SMa0237
SMa0241: SMa0241 - epimerase, at 133,771 to 134,754
SMa0241
SMa0244: SMa0244 - Dehydrogenase, FAD-dependent, at 134,949 to 136,394
SMa0244
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.805 kb on + strand at 132.806 kb on - strand at 132.825 kb on - strand at 132.825 kb on - strand at 133.375 kb on + strand, within SMa0237 at 133.504 kb on + strand, within SMa0237 at 133.504 kb on + strand, within SMa0237 at 133.504 kb on + strand, within SMa0237 at 133.504 kb on + strand, within SMa0237 at 133.505 kb on - strand, within SMa0237 at 133.505 kb on - strand, within SMa0237 at 133.519 kb on + strand, within SMa0237 at 133.589 kb on - strand, within SMa0237 at 133.685 kb on - strand, within SMa0237 at 134.261 kb on + strand, within SMa0241 at 134.262 kb on - strand, within SMa0241 at 134.303 kb on + strand, within SMa0241 at 134.304 kb on - strand, within SMa0241 at 134.319 kb on + strand, within SMa0241 at 134.320 kb on - strand, within SMa0241 at 134.320 kb on - strand, within SMa0241 at 134.327 kb on + strand, within SMa0241 at 134.328 kb on - strand, within SMa0241 at 134.402 kb on + strand, within SMa0241 at 134.402 kb on + strand, within SMa0241 at 134.638 kb on + strand, within SMa0241 at 134.639 kb on - strand, within SMa0241 at 134.639 kb on - strand, within SMa0241 at 134.749 kb on - strand at 134.840 kb on + strand at 134.864 kb on + strand at 134.865 kb on - strand at 134.968 kb on + strand at 135.030 kb on - strand at 135.643 kb on + strand, within SMa0244
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 132,805 + -0.6 132,806 - -0.4 132,825 - -0.7 132,825 - +0.8 133,375 + SMa0237 0.55 +0.1 133,504 + SMa0237 0.69 -0.5 133,504 + SMa0237 0.69 -0.1 133,504 + SMa0237 0.69 +0.3 133,504 + SMa0237 0.69 +0.0 133,505 - SMa0237 0.69 -1.8 133,505 - SMa0237 0.69 +0.2 133,519 + SMa0237 0.71 -0.3 133,589 - SMa0237 0.79 +1.9 133,685 - SMa0237 0.90 +0.5 134,261 + SMa0241 0.50 +0.4 134,262 - SMa0241 0.50 -1.0 134,303 + SMa0241 0.54 +0.8 134,304 - SMa0241 0.54 -0.7 134,319 + SMa0241 0.56 -0.4 134,320 - SMa0241 0.56 +0.2 134,320 - SMa0241 0.56 -0.1 134,327 + SMa0241 0.57 -0.5 134,328 - SMa0241 0.57 -0.3 134,402 + SMa0241 0.64 -0.4 134,402 + SMa0241 0.64 -0.9 134,638 + SMa0241 0.88 -0.7 134,639 - SMa0241 0.88 -1.1 134,639 - SMa0241 0.88 -0.3 134,749 - -0.3 134,840 + -0.7 134,864 + -0.0 134,865 - +0.1 134,968 + -0.8 135,030 - -1.2 135,643 + SMa0244 0.48 +0.3
Or see this region's nucleotide sequence