Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0187 and SMa0189 are separated by 425 nucleotides SMa0189 and SMa0190 are separated by 88 nucleotides
SMa0187: SMa0187 - short chain dehydrogenase, at 102,649 to 103,602
SMa0187
SMa0189: SMa0189 - hypothetical protein, at 104,028 to 104,471
SMa0189
SMa0190: SMa0190 - transcriptional regulator, at 104,560 to 105,189
SMa0190
Position (kb) 104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 103.210 kb on + strand, within SMa0187 at 103.211 kb on - strand, within SMa0187 at 103.222 kb on + strand, within SMa0187 at 103.222 kb on + strand, within SMa0187 at 103.222 kb on + strand, within SMa0187 at 103.223 kb on - strand, within SMa0187 at 103.223 kb on - strand, within SMa0187 at 103.321 kb on + strand, within SMa0187 at 103.321 kb on + strand, within SMa0187 at 103.321 kb on + strand, within SMa0187 at 103.322 kb on - strand, within SMa0187 at 103.322 kb on - strand, within SMa0187 at 103.322 kb on - strand, within SMa0187 at 103.528 kb on + strand at 103.612 kb on + strand at 103.658 kb on + strand at 103.658 kb on + strand at 103.659 kb on - strand at 103.725 kb on + strand at 103.954 kb on + strand at 103.969 kb on - strand at 103.976 kb on + strand at 103.990 kb on + strand at 103.991 kb on - strand at 103.994 kb on - strand at 104.007 kb on + strand at 104.007 kb on + strand at 104.007 kb on + strand at 104.010 kb on + strand at 104.121 kb on + strand, within SMa0189 at 104.154 kb on + strand, within SMa0189 at 104.154 kb on + strand, within SMa0189 at 104.381 kb on + strand, within SMa0189 at 104.382 kb on - strand, within SMa0189 at 104.382 kb on - strand, within SMa0189 at 104.420 kb on - strand, within SMa0189 at 104.502 kb on + strand at 104.523 kb on + strand at 104.524 kb on - strand at 104.569 kb on - strand at 104.738 kb on + strand, within SMa0190 at 104.739 kb on - strand, within SMa0190 at 104.784 kb on + strand, within SMa0190 at 104.785 kb on - strand, within SMa0190 at 105.048 kb on + strand, within SMa0190 at 105.061 kb on + strand, within SMa0190 at 105.061 kb on + strand, within SMa0190 at 105.062 kb on - strand, within SMa0190 at 105.092 kb on - strand, within SMa0190 at 105.131 kb on + strand at 105.131 kb on + strand at 105.131 kb on + strand at 105.131 kb on + strand at 105.187 kb on + strand at 105.255 kb on - strand at 105.255 kb on - strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.264 kb on - strand at 105.305 kb on + strand at 105.365 kb on - strand at 105.394 kb on + strand at 105.394 kb on + strand at 105.394 kb on + strand at 105.450 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 103,210 + SMa0187 0.59 +0.9 103,211 - SMa0187 0.59 -0.1 103,222 + SMa0187 0.60 +0.1 103,222 + SMa0187 0.60 +1.8 103,222 + SMa0187 0.60 -0.6 103,223 - SMa0187 0.60 -0.2 103,223 - SMa0187 0.60 +0.0 103,321 + SMa0187 0.70 -0.2 103,321 + SMa0187 0.70 -0.4 103,321 + SMa0187 0.70 -0.3 103,322 - SMa0187 0.71 -0.3 103,322 - SMa0187 0.71 +0.8 103,322 - SMa0187 0.71 -0.9 103,528 + -0.0 103,612 + -0.3 103,658 + +0.2 103,658 + -0.0 103,659 - +1.8 103,725 + +1.1 103,954 + -1.2 103,969 - -2.1 103,976 + -0.5 103,990 + -1.4 103,991 - -0.6 103,994 - -0.2 104,007 + -0.7 104,007 + +0.2 104,007 + -1.5 104,010 + +0.9 104,121 + SMa0189 0.21 +0.8 104,154 + SMa0189 0.28 +0.1 104,154 + SMa0189 0.28 +0.3 104,381 + SMa0189 0.80 +0.8 104,382 - SMa0189 0.80 +0.3 104,382 - SMa0189 0.80 +0.0 104,420 - SMa0189 0.88 +0.7 104,502 + -0.1 104,523 + -0.6 104,524 - -0.5 104,569 - -0.0 104,738 + SMa0190 0.28 +0.4 104,739 - SMa0190 0.28 -0.3 104,784 + SMa0190 0.36 -0.0 104,785 - SMa0190 0.36 +0.8 105,048 + SMa0190 0.77 +0.1 105,061 + SMa0190 0.80 +0.8 105,061 + SMa0190 0.80 -1.1 105,062 - SMa0190 0.80 +0.5 105,092 - SMa0190 0.84 -0.2 105,131 + +0.1 105,131 + +1.8 105,131 + -0.1 105,131 + +0.4 105,187 + -0.1 105,255 - -1.5 105,255 - -0.2 105,259 + +1.0 105,259 + +0.3 105,259 + -0.2 105,259 + -0.2 105,260 - -0.4 105,260 - +0.1 105,260 - -0.3 105,260 - -0.1 105,260 - +0.1 105,264 - -0.3 105,305 + +0.0 105,365 - -0.2 105,394 + -0.3 105,394 + -0.2 105,394 + -1.0 105,450 + -0.4
Or see this region's nucleotide sequence