Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0112 and SMa0113 are separated by 468 nucleotides SMa0113 and SMa0114 are separated by 27 nucleotides SMa0114 and SMa0116 are separated by 545 nucleotides
SMa0112: SMa0112 - hypothetical protein, at 58,803 to 59,234
SMa0112
SMa0113: SMa0113 - Sensor histidine kinase, at 59,703 to 62,264
SMa0113
SMa0114: SMa0114 - two-component response regulator, at 62,292 to 62,654
SMa0114
SMa0116: SMa0116 - DnaJ/CbpA-type protein, at 63,200 to 64,117
SMa0116
Position (kb) 59
60
61
62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 58.796 kb on - strand at 58.839 kb on + strand at 58.929 kb on + strand, within SMa0112 at 58.936 kb on - strand, within SMa0112 at 59.033 kb on + strand, within SMa0112 at 59.049 kb on - strand, within SMa0112 at 59.083 kb on + strand, within SMa0112 at 59.168 kb on + strand, within SMa0112 at 59.217 kb on + strand at 59.249 kb on + strand at 59.249 kb on + strand at 59.250 kb on - strand at 59.349 kb on + strand at 59.349 kb on + strand at 59.349 kb on + strand at 59.349 kb on + strand at 59.350 kb on - strand at 59.350 kb on - strand at 59.357 kb on + strand at 59.373 kb on - strand at 59.485 kb on - strand at 59.537 kb on + strand at 59.609 kb on - strand at 59.727 kb on + strand at 59.727 kb on + strand at 59.727 kb on + strand at 59.727 kb on + strand at 59.727 kb on + strand at 59.727 kb on + strand at 59.728 kb on - strand at 59.728 kb on - strand at 59.728 kb on - strand at 59.728 kb on - strand at 59.728 kb on - strand at 59.728 kb on - strand at 59.728 kb on - strand at 59.728 kb on - strand at 59.768 kb on - strand at 59.768 kb on - strand at 59.792 kb on + strand at 59.793 kb on - strand at 59.793 kb on - strand at 59.793 kb on - strand at 59.820 kb on - strand at 59.820 kb on - strand at 59.821 kb on + strand at 59.836 kb on - strand at 59.836 kb on - strand at 59.868 kb on + strand at 59.869 kb on - strand at 59.897 kb on + strand at 60.115 kb on + strand, within SMa0113 at 60.116 kb on - strand, within SMa0113 at 60.180 kb on - strand, within SMa0113 at 60.180 kb on - strand, within SMa0113 at 60.272 kb on + strand, within SMa0113 at 60.272 kb on + strand, within SMa0113 at 60.312 kb on + strand, within SMa0113 at 60.313 kb on - strand, within SMa0113 at 60.313 kb on - strand, within SMa0113 at 60.313 kb on - strand, within SMa0113 at 60.316 kb on + strand, within SMa0113 at 60.316 kb on + strand, within SMa0113 at 60.317 kb on - strand, within SMa0113 at 60.406 kb on - strand, within SMa0113 at 60.494 kb on + strand, within SMa0113 at 60.515 kb on + strand, within SMa0113 at 60.518 kb on - strand, within SMa0113 at 60.518 kb on - strand, within SMa0113 at 60.580 kb on - strand, within SMa0113 at 60.629 kb on - strand, within SMa0113 at 60.629 kb on - strand, within SMa0113 at 60.745 kb on - strand, within SMa0113 at 60.773 kb on + strand, within SMa0113 at 60.774 kb on - strand, within SMa0113 at 60.777 kb on + strand, within SMa0113 at 60.777 kb on + strand, within SMa0113 at 60.777 kb on + strand, within SMa0113 at 60.777 kb on + strand, within SMa0113 at 60.778 kb on - strand, within SMa0113 at 60.778 kb on - strand, within SMa0113 at 60.778 kb on - strand, within SMa0113 at 60.778 kb on - strand, within SMa0113 at 60.778 kb on - strand, within SMa0113 at 60.778 kb on - strand, within SMa0113 at 60.778 kb on - strand, within SMa0113 at 60.778 kb on - strand, within SMa0113 at 60.782 kb on + strand, within SMa0113 at 60.812 kb on + strand, within SMa0113 at 60.823 kb on - strand, within SMa0113 at 60.834 kb on + strand, within SMa0113 at 60.835 kb on - strand, within SMa0113 at 60.947 kb on + strand, within SMa0113 at 60.947 kb on + strand, within SMa0113 at 60.947 kb on + strand, within SMa0113 at 60.947 kb on + strand, within SMa0113 at 60.947 kb on + strand, within SMa0113 at 60.947 kb on + strand, within SMa0113 at 60.948 kb on - strand, within SMa0113 at 61.023 kb on - strand, within SMa0113 at 61.023 kb on - strand, within SMa0113 at 61.023 kb on - strand, within SMa0113 at 61.067 kb on + strand, within SMa0113 at 61.067 kb on + strand, within SMa0113 at 61.068 kb on - strand, within SMa0113 at 61.093 kb on - strand, within SMa0113 at 61.095 kb on - strand, within SMa0113 at 61.110 kb on + strand, within SMa0113 at 61.202 kb on + strand, within SMa0113 at 61.203 kb on - strand, within SMa0113 at 61.219 kb on + strand, within SMa0113 at 61.220 kb on - strand, within SMa0113 at 61.220 kb on - strand, within SMa0113 at 61.220 kb on - strand, within SMa0113 at 61.220 kb on - strand, within SMa0113 at 61.224 kb on + strand, within SMa0113 at 61.274 kb on + strand, within SMa0113 at 61.274 kb on + strand, within SMa0113 at 61.275 kb on - strand, within SMa0113 at 61.275 kb on - strand, within SMa0113 at 61.275 kb on - strand, within SMa0113 at 61.364 kb on - strand, within SMa0113 at 61.364 kb on - strand, within SMa0113 at 61.364 kb on - strand, within SMa0113 at 61.400 kb on + strand, within SMa0113 at 61.401 kb on - strand, within SMa0113 at 61.425 kb on + strand, within SMa0113 at 61.457 kb on - strand, within SMa0113 at 61.457 kb on - strand, within SMa0113 at 61.457 kb on - strand, within SMa0113 at 61.540 kb on - strand, within SMa0113 at 61.540 kb on - strand, within SMa0113 at 61.549 kb on + strand, within SMa0113 at 61.550 kb on - strand, within SMa0113 at 61.550 kb on - strand, within SMa0113 at 61.553 kb on + strand, within SMa0113 at 61.653 kb on - strand, within SMa0113 at 61.772 kb on - strand, within SMa0113 at 61.772 kb on - strand, within SMa0113 at 61.841 kb on + strand, within SMa0113 at 61.841 kb on + strand, within SMa0113 at 61.842 kb on - strand, within SMa0113 at 62.087 kb on - strand at 62.101 kb on + strand at 62.101 kb on + strand at 62.102 kb on - strand at 62.102 kb on - strand at 62.360 kb on + strand, within SMa0114 at 62.360 kb on + strand, within SMa0114 at 62.361 kb on - strand, within SMa0114 at 62.361 kb on - strand, within SMa0114 at 62.361 kb on - strand, within SMa0114 at 62.365 kb on + strand, within SMa0114 at 62.366 kb on - strand, within SMa0114 at 62.564 kb on + strand, within SMa0114 at 62.565 kb on - strand, within SMa0114 at 62.565 kb on - strand, within SMa0114 at 62.565 kb on - strand, within SMa0114 at 62.571 kb on + strand, within SMa0114 at 62.571 kb on + strand, within SMa0114 at 62.572 kb on - strand, within SMa0114 at 62.572 kb on - strand, within SMa0114 at 62.626 kb on + strand at 62.627 kb on - strand at 62.758 kb on - strand at 62.758 kb on - strand at 62.789 kb on + strand at 62.789 kb on + strand at 62.789 kb on + strand at 62.790 kb on - strand at 62.790 kb on - strand at 62.864 kb on - strand at 62.864 kb on - strand at 62.868 kb on + strand at 62.868 kb on + strand at 62.869 kb on - strand at 62.869 kb on - strand at 62.869 kb on - strand at 62.869 kb on - strand at 62.869 kb on - strand at 62.876 kb on - strand at 62.996 kb on - strand at 62.997 kb on + strand at 63.019 kb on + strand at 63.019 kb on + strand at 63.020 kb on - strand at 63.046 kb on + strand at 63.121 kb on + strand at 63.127 kb on - strand at 63.180 kb on + strand at 63.216 kb on - strand at 63.223 kb on - strand at 63.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 58,796 - +0.4 58,839 + -1.0 58,929 + SMa0112 0.29 -0.0 58,936 - SMa0112 0.31 +0.8 59,033 + SMa0112 0.53 -0.0 59,049 - SMa0112 0.57 -0.7 59,083 + SMa0112 0.65 -1.4 59,168 + SMa0112 0.84 -0.7 59,217 + -1.0 59,249 + -1.0 59,249 + +0.1 59,250 - -0.2 59,349 + -0.2 59,349 + -0.4 59,349 + -0.8 59,349 + -1.9 59,350 - -0.6 59,350 - +0.3 59,357 + +0.1 59,373 - +0.1 59,485 - +1.0 59,537 + -1.7 59,609 - -0.5 59,727 + +0.7 59,727 + +0.4 59,727 + +1.5 59,727 + +1.0 59,727 + +0.3 59,727 + -0.3 59,728 - +0.4 59,728 - +0.4 59,728 - +0.5 59,728 - +0.8 59,728 - +0.2 59,728 - +0.2 59,728 - +0.1 59,728 - +0.6 59,768 - +0.3 59,768 - +0.6 59,792 + +0.3 59,793 - +2.1 59,793 - +0.3 59,793 - +0.7 59,820 - -0.4 59,820 - +1.5 59,821 + +0.9 59,836 - +0.7 59,836 - +1.3 59,868 + +0.7 59,869 - +0.8 59,897 + -0.6 60,115 + SMa0113 0.16 +1.0 60,116 - SMa0113 0.16 +0.1 60,180 - SMa0113 0.19 +0.4 60,180 - SMa0113 0.19 -1.5 60,272 + SMa0113 0.22 +0.5 60,272 + SMa0113 0.22 +0.7 60,312 + SMa0113 0.24 +0.7 60,313 - SMa0113 0.24 +0.5 60,313 - SMa0113 0.24 +0.1 60,313 - SMa0113 0.24 +1.3 60,316 + SMa0113 0.24 +0.3 60,316 + SMa0113 0.24 +0.1 60,317 - SMa0113 0.24 +0.2 60,406 - SMa0113 0.27 +0.6 60,494 + SMa0113 0.31 +0.8 60,515 + SMa0113 0.32 +0.8 60,518 - SMa0113 0.32 +0.5 60,518 - SMa0113 0.32 +1.2 60,580 - SMa0113 0.34 +0.3 60,629 - SMa0113 0.36 +0.3 60,629 - SMa0113 0.36 +0.5 60,745 - SMa0113 0.41 +0.6 60,773 + SMa0113 0.42 +0.4 60,774 - SMa0113 0.42 +0.6 60,777 + SMa0113 0.42 +0.3 60,777 + SMa0113 0.42 +0.1 60,777 + SMa0113 0.42 +0.2 60,777 + SMa0113 0.42 +0.4 60,778 - SMa0113 0.42 +0.7 60,778 - SMa0113 0.42 -0.7 60,778 - SMa0113 0.42 -0.2 60,778 - SMa0113 0.42 +0.1 60,778 - SMa0113 0.42 +0.3 60,778 - SMa0113 0.42 -0.1 60,778 - SMa0113 0.42 -1.0 60,778 - SMa0113 0.42 +0.7 60,782 + SMa0113 0.42 +0.6 60,812 + SMa0113 0.43 -0.8 60,823 - SMa0113 0.44 -0.1 60,834 + SMa0113 0.44 +0.4 60,835 - SMa0113 0.44 +0.3 60,947 + SMa0113 0.49 +0.9 60,947 + SMa0113 0.49 +0.3 60,947 + SMa0113 0.49 +0.8 60,947 + SMa0113 0.49 +0.1 60,947 + SMa0113 0.49 +1.2 60,947 + SMa0113 0.49 +0.5 60,948 - SMa0113 0.49 -0.0 61,023 - SMa0113 0.52 +1.1 61,023 - SMa0113 0.52 -0.5 61,023 - SMa0113 0.52 +1.2 61,067 + SMa0113 0.53 +0.3 61,067 + SMa0113 0.53 +0.6 61,068 - SMa0113 0.53 -0.1 61,093 - SMa0113 0.54 +0.5 61,095 - SMa0113 0.54 +1.1 61,110 + SMa0113 0.55 +0.3 61,202 + SMa0113 0.59 +0.1 61,203 - SMa0113 0.59 +0.9 61,219 + SMa0113 0.59 +0.9 61,220 - SMa0113 0.59 +0.2 61,220 - SMa0113 0.59 +0.3 61,220 - SMa0113 0.59 +0.2 61,220 - SMa0113 0.59 +0.4 61,224 + SMa0113 0.59 -0.4 61,274 + SMa0113 0.61 +0.1 61,274 + SMa0113 0.61 +0.0 61,275 - SMa0113 0.61 +1.6 61,275 - SMa0113 0.61 +1.2 61,275 - SMa0113 0.61 +0.5 61,364 - SMa0113 0.65 -0.0 61,364 - SMa0113 0.65 +1.6 61,364 - SMa0113 0.65 +1.0 61,400 + SMa0113 0.66 +0.2 61,401 - SMa0113 0.66 +0.5 61,425 + SMa0113 0.67 +0.8 61,457 - SMa0113 0.68 +0.8 61,457 - SMa0113 0.68 +0.0 61,457 - SMa0113 0.68 +0.4 61,540 - SMa0113 0.72 -0.7 61,540 - SMa0113 0.72 +0.0 61,549 + SMa0113 0.72 -0.4 61,550 - SMa0113 0.72 +0.4 61,550 - SMa0113 0.72 -0.2 61,553 + SMa0113 0.72 +0.5 61,653 - SMa0113 0.76 +0.5 61,772 - SMa0113 0.81 +0.4 61,772 - SMa0113 0.81 +1.6 61,841 + SMa0113 0.83 -0.4 61,841 + SMa0113 0.83 +1.5 61,842 - SMa0113 0.83 +0.3 62,087 - +1.3 62,101 + +0.4 62,101 + -0.2 62,102 - +0.8 62,102 - +1.1 62,360 + SMa0114 0.19 +0.3 62,360 + SMa0114 0.19 +0.1 62,361 - SMa0114 0.19 -1.1 62,361 - SMa0114 0.19 +0.2 62,361 - SMa0114 0.19 +0.8 62,365 + SMa0114 0.20 -0.2 62,366 - SMa0114 0.20 +0.1 62,564 + SMa0114 0.75 +0.2 62,565 - SMa0114 0.75 -0.0 62,565 - SMa0114 0.75 +0.3 62,565 - SMa0114 0.75 +0.8 62,571 + SMa0114 0.77 +0.1 62,571 + SMa0114 0.77 -0.4 62,572 - SMa0114 0.77 -0.6 62,572 - SMa0114 0.77 +0.7 62,626 + +1.3 62,627 - -0.6 62,758 - +0.5 62,758 - -0.5 62,789 + +0.3 62,789 + +1.6 62,789 + -2.7 62,790 - -0.2 62,790 - +0.0 62,864 - -0.5 62,864 - +1.4 62,868 + -0.4 62,868 + -0.2 62,869 - -0.2 62,869 - -0.2 62,869 - +0.5 62,869 - +1.5 62,869 - -0.7 62,876 - -0.5 62,996 - +0.3 62,997 + +0.4 63,019 + -0.2 63,019 + -0.2 63,020 - -0.3 63,046 + -0.9 63,121 + +0.1 63,127 - +0.6 63,180 + +0.7 63,216 - -0.1 63,223 - -0.6 63,239 - -0.1
Or see this region's nucleotide sequence