Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21316 and SM_b21317 are separated by 196 nucleotides SM_b21317 and SM_b21318 are separated by 137 nucleotides SM_b21318 and SM_b21319 are separated by 183 nucleotides
SM_b21316: SM_b21316 - ABC transporter ATP-binding protein/permease, at 981,935 to 983,704
_b21316
SM_b21317: SM_b21317 - transcriptional activator of exopolysaccharide II synthesis, MarR family protein, at 983,901 to 984,485
_b21317
SM_b21318: SM_b21318 - glycosyltransferase, forming alpha-glycosyl linkages protein, at 984,623 to 985,876
_b21318
SM_b21319: SM_b21319 - hypothetical protein, at 986,060 to 987,532
_b21319
Position (kb) 984
985
986 Strain fitness (log2 ratio) -2
-1
0
1
2 at 983.674 kb on + strand at 983.674 kb on + strand at 983.675 kb on - strand at 983.675 kb on - strand at 983.696 kb on - strand at 983.696 kb on - strand at 983.717 kb on + strand at 983.717 kb on + strand at 983.718 kb on - strand at 983.777 kb on - strand at 983.788 kb on - strand at 983.891 kb on + strand at 983.926 kb on + strand at 983.926 kb on + strand at 983.927 kb on - strand at 983.927 kb on - strand at 984.216 kb on + strand, within SM_b21317 at 984.216 kb on + strand, within SM_b21317 at 984.216 kb on + strand, within SM_b21317 at 984.217 kb on - strand, within SM_b21317 at 984.217 kb on - strand, within SM_b21317 at 984.237 kb on + strand, within SM_b21317 at 984.237 kb on + strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.366 kb on - strand, within SM_b21317 at 984.475 kb on - strand at 984.514 kb on - strand at 984.550 kb on + strand at 984.622 kb on + strand at 984.622 kb on + strand at 984.622 kb on + strand at 984.623 kb on - strand at 984.623 kb on - strand at 984.623 kb on - strand at 984.636 kb on + strand at 984.636 kb on + strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.645 kb on + strand at 984.645 kb on + strand at 984.646 kb on - strand at 984.917 kb on - strand, within SM_b21318 at 984.918 kb on + strand, within SM_b21318 at 984.918 kb on + strand, within SM_b21318 at 984.918 kb on + strand, within SM_b21318 at 984.918 kb on + strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.977 kb on + strand, within SM_b21318 at 985.145 kb on + strand, within SM_b21318 at 985.146 kb on - strand, within SM_b21318 at 985.252 kb on - strand, within SM_b21318 at 985.252 kb on - strand, within SM_b21318 at 985.510 kb on - strand, within SM_b21318 at 985.544 kb on + strand, within SM_b21318 at 985.545 kb on - strand, within SM_b21318 at 985.545 kb on - strand, within SM_b21318 at 985.545 kb on - strand, within SM_b21318 at 985.545 kb on - strand, within SM_b21318 at 985.554 kb on - strand, within SM_b21318 at 986.203 kb on + strand at 986.203 kb on + strand at 986.290 kb on + strand, within SM_b21319 at 986.291 kb on - strand, within SM_b21319 at 986.291 kb on - strand, within SM_b21319 at 986.517 kb on + strand, within SM_b21319 at 986.608 kb on + strand, within SM_b21319 at 986.609 kb on - strand, within SM_b21319 at 986.609 kb on - strand, within SM_b21319 at 986.687 kb on + strand, within SM_b21319 at 986.687 kb on + strand, within SM_b21319 at 986.687 kb on + strand, within SM_b21319 at 986.688 kb on - strand, within SM_b21319 at 986.729 kb on + strand, within SM_b21319 at 986.836 kb on - strand, within SM_b21319
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 983,674 + -0.1 983,674 + +0.4 983,675 - +0.7 983,675 - -0.2 983,696 - -0.3 983,696 - +0.1 983,717 + +2.0 983,717 + +2.2 983,718 - -0.6 983,777 - +0.1 983,788 - -0.6 983,891 + -0.3 983,926 + +0.0 983,926 + +0.0 983,927 - +0.4 983,927 - -0.2 984,216 + SM_b21317 0.54 -0.7 984,216 + SM_b21317 0.54 +0.3 984,216 + SM_b21317 0.54 -0.7 984,217 - SM_b21317 0.54 +0.8 984,217 - SM_b21317 0.54 -0.3 984,237 + SM_b21317 0.57 +0.2 984,237 + SM_b21317 0.57 +0.2 984,238 - SM_b21317 0.58 -0.2 984,238 - SM_b21317 0.58 -0.6 984,238 - SM_b21317 0.58 +0.3 984,238 - SM_b21317 0.58 -0.4 984,366 - SM_b21317 0.79 -0.4 984,475 - -0.1 984,514 - -0.1 984,550 + +0.4 984,622 + +0.3 984,622 + +0.4 984,622 + -0.7 984,623 - -1.2 984,623 - -0.7 984,623 - +0.3 984,636 + +0.0 984,636 + -0.3 984,637 - -2.1 984,637 - +0.1 984,637 - +0.5 984,637 - -0.3 984,645 + -0.4 984,645 + +0.8 984,646 - -2.2 984,917 - SM_b21318 0.23 -0.4 984,918 + SM_b21318 0.24 -1.6 984,918 + SM_b21318 0.24 +0.5 984,918 + SM_b21318 0.24 -0.6 984,918 + SM_b21318 0.24 -0.2 984,919 - SM_b21318 0.24 -1.7 984,919 - SM_b21318 0.24 -0.2 984,919 - SM_b21318 0.24 -0.7 984,919 - SM_b21318 0.24 -0.8 984,919 - SM_b21318 0.24 -0.6 984,919 - SM_b21318 0.24 -0.6 984,977 + SM_b21318 0.28 +0.1 985,145 + SM_b21318 0.42 -0.6 985,146 - SM_b21318 0.42 +0.2 985,252 - SM_b21318 0.50 -0.7 985,252 - SM_b21318 0.50 -0.8 985,510 - SM_b21318 0.71 -0.4 985,544 + SM_b21318 0.73 -1.0 985,545 - SM_b21318 0.74 -0.2 985,545 - SM_b21318 0.74 -0.0 985,545 - SM_b21318 0.74 -0.9 985,545 - SM_b21318 0.74 -0.5 985,554 - SM_b21318 0.74 +1.3 986,203 + -0.5 986,203 + +0.4 986,290 + SM_b21319 0.16 -0.3 986,291 - SM_b21319 0.16 -0.4 986,291 - SM_b21319 0.16 +0.1 986,517 + SM_b21319 0.31 -0.1 986,608 + SM_b21319 0.37 -0.3 986,609 - SM_b21319 0.37 -0.0 986,609 - SM_b21319 0.37 -1.2 986,687 + SM_b21319 0.43 -0.4 986,687 + SM_b21319 0.43 -0.1 986,687 + SM_b21319 0.43 -0.2 986,688 - SM_b21319 0.43 +0.4 986,729 + SM_b21319 0.45 -0.5 986,836 - SM_b21319 0.53 +0.4
Or see this region's nucleotide sequence