Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21295 and SM_b21296 are separated by 270 nucleotides SM_b21296 and SM_b21297 are separated by 37 nucleotides SM_b21297 and SM_b21298 are separated by 8 nucleotides
SM_b21295: SM_b21295 - Hsp20 family heat-shock protein, at 871,579 to 872,163
_b21295
SM_b21296: SM_b21296 - hypothetical protein, at 872,434 to 872,739
_b21296
SM_b21297: SM_b21297 - bifunctional penicillin-binding protein, at 872,777 to 874,918
_b21297
SM_b21298: SM_b21298 - hypothetical protein, at 874,927 to 880,374
_b21298
Position (kb) 872
873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 871.796 kb on + strand, within SM_b21295 at 871.802 kb on + strand, within SM_b21295 at 871.802 kb on + strand, within SM_b21295 at 872.059 kb on - strand, within SM_b21295 at 872.157 kb on + strand at 872.258 kb on + strand at 872.258 kb on + strand at 872.258 kb on + strand at 872.302 kb on + strand at 872.302 kb on + strand at 872.345 kb on + strand at 872.345 kb on + strand at 872.516 kb on - strand, within SM_b21296 at 872.570 kb on - strand, within SM_b21296 at 872.610 kb on + strand, within SM_b21296 at 873.268 kb on - strand, within SM_b21297 at 873.309 kb on + strand, within SM_b21297 at 873.309 kb on + strand, within SM_b21297 at 873.310 kb on - strand, within SM_b21297 at 873.310 kb on - strand, within SM_b21297 at 873.377 kb on + strand, within SM_b21297 at 873.378 kb on - strand, within SM_b21297 at 873.378 kb on - strand, within SM_b21297 at 873.498 kb on + strand, within SM_b21297 at 873.706 kb on - strand, within SM_b21297 at 874.122 kb on - strand, within SM_b21297 at 874.378 kb on - strand, within SM_b21297 at 874.378 kb on - strand, within SM_b21297 at 874.481 kb on - strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.525 kb on + strand at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.818 kb on - strand at 874.894 kb on - strand at 874.988 kb on + strand at 874.988 kb on + strand at 874.989 kb on - strand at 874.989 kb on - strand at 875.021 kb on + strand at 875.022 kb on - strand at 875.022 kb on - strand at 875.052 kb on - strand at 875.052 kb on - strand at 875.052 kb on - strand at 875.127 kb on + strand at 875.128 kb on - strand at 875.285 kb on + strand at 875.285 kb on + strand at 875.286 kb on - strand at 875.286 kb on - strand at 875.340 kb on - strand at 875.342 kb on + strand at 875.343 kb on - strand at 875.495 kb on + strand, within SM_b21298 at 875.603 kb on + strand, within SM_b21298 at 875.603 kb on + strand, within SM_b21298 at 875.607 kb on + strand, within SM_b21298 at 875.608 kb on - strand, within SM_b21298 at 875.641 kb on + strand, within SM_b21298 at 875.641 kb on + strand, within SM_b21298 at 875.642 kb on - strand, within SM_b21298 at 875.723 kb on + strand, within SM_b21298 at 875.766 kb on + strand, within SM_b21298 at 875.788 kb on - strand, within SM_b21298 at 875.904 kb on + strand, within SM_b21298 at 875.904 kb on + strand, within SM_b21298
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 871,796 + SM_b21295 0.37 -0.3 871,802 + SM_b21295 0.38 -0.7 871,802 + SM_b21295 0.38 +0.2 872,059 - SM_b21295 0.82 -0.1 872,157 + -0.9 872,258 + +0.0 872,258 + -0.7 872,258 + -1.2 872,302 + -0.4 872,302 + -0.2 872,345 + +0.6 872,345 + -0.2 872,516 - SM_b21296 0.27 +0.5 872,570 - SM_b21296 0.44 -0.4 872,610 + SM_b21296 0.58 -0.4 873,268 - SM_b21297 0.23 +0.2 873,309 + SM_b21297 0.25 +0.4 873,309 + SM_b21297 0.25 -0.5 873,310 - SM_b21297 0.25 +0.5 873,310 - SM_b21297 0.25 +0.2 873,377 + SM_b21297 0.28 -0.4 873,378 - SM_b21297 0.28 -0.5 873,378 - SM_b21297 0.28 +0.8 873,498 + SM_b21297 0.34 -0.0 873,706 - SM_b21297 0.43 -0.0 874,122 - SM_b21297 0.63 +1.2 874,378 - SM_b21297 0.75 -0.1 874,378 - SM_b21297 0.75 -1.4 874,481 - SM_b21297 0.80 -0.8 874,523 + SM_b21297 0.82 +0.4 874,523 + SM_b21297 0.82 -1.2 874,523 + SM_b21297 0.82 +0.8 874,524 - SM_b21297 0.82 -0.5 874,524 - SM_b21297 0.82 -0.1 874,524 - SM_b21297 0.82 +0.0 874,525 + +1.4 874,526 - SM_b21297 0.82 +0.2 874,526 - SM_b21297 0.82 +0.2 874,526 - SM_b21297 0.82 +0.6 874,526 - SM_b21297 0.82 -0.6 874,818 - +0.7 874,894 - +0.9 874,988 + -0.1 874,988 + -0.2 874,989 - +0.6 874,989 - -1.1 875,021 + -3.2 875,022 - -0.7 875,022 - -0.7 875,052 - +0.4 875,052 - -0.2 875,052 - +0.8 875,127 + -0.1 875,128 - +0.4 875,285 + +1.6 875,285 + -0.3 875,286 - -0.5 875,286 - -0.2 875,340 - -0.5 875,342 + +0.3 875,343 - +0.1 875,495 + SM_b21298 0.10 +1.4 875,603 + SM_b21298 0.12 +0.1 875,603 + SM_b21298 0.12 +0.1 875,607 + SM_b21298 0.12 +1.7 875,608 - SM_b21298 0.12 +2.0 875,641 + SM_b21298 0.13 -0.3 875,641 + SM_b21298 0.13 +0.5 875,642 - SM_b21298 0.13 +0.4 875,723 + SM_b21298 0.15 +0.5 875,766 + SM_b21298 0.15 +0.3 875,788 - SM_b21298 0.16 +0.4 875,904 + SM_b21298 0.18 +0.1 875,904 + SM_b21298 0.18 +0.1
Or see this region's nucleotide sequence