Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21053 and SM_b21054 are separated by 88 nucleotides SM_b21054 and SM_b21055 are separated by 232 nucleotides SM_b21055 and SM_b21056 are separated by 134 nucleotides
SM_b21053: SM_b21053 - membrane-anchored glycosyltransferase, at 686,566 to 687,816
_b21053
SM_b21054: SM_b21054 - hypothetical protein, at 687,905 to 688,522
_b21054
SM_b21055: SM_b21055 - hypothetical protein, at 688,755 to 689,339
_b21055
SM_b21056: SM_b21056 - esterase, at 689,474 to 691,801
_b21056
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 686.912 kb on - strand, within SM_b21053 at 686.912 kb on - strand, within SM_b21053 at 686.934 kb on - strand, within SM_b21053 at 686.956 kb on - strand, within SM_b21053 at 687.062 kb on + strand, within SM_b21053 at 687.062 kb on + strand, within SM_b21053 at 687.062 kb on + strand, within SM_b21053 at 687.191 kb on + strand, within SM_b21053 at 687.212 kb on + strand, within SM_b21053 at 687.242 kb on + strand, within SM_b21053 at 687.242 kb on + strand, within SM_b21053 at 687.304 kb on + strand, within SM_b21053 at 687.377 kb on - strand, within SM_b21053 at 687.401 kb on - strand, within SM_b21053 at 687.496 kb on + strand, within SM_b21053 at 687.497 kb on - strand, within SM_b21053 at 687.497 kb on - strand, within SM_b21053 at 687.514 kb on - strand, within SM_b21053 at 687.607 kb on - strand, within SM_b21053 at 687.607 kb on - strand, within SM_b21053 at 687.683 kb on + strand, within SM_b21053 at 687.684 kb on - strand, within SM_b21053 at 687.786 kb on - strand at 687.797 kb on - strand at 687.824 kb on + strand at 687.824 kb on + strand at 687.824 kb on + strand at 687.825 kb on - strand at 687.831 kb on + strand at 687.831 kb on + strand at 687.831 kb on + strand at 687.832 kb on - strand at 687.832 kb on - strand at 687.832 kb on - strand at 687.832 kb on - strand at 687.947 kb on - strand at 687.947 kb on - strand at 687.947 kb on - strand at 687.949 kb on - strand at 687.949 kb on - strand at 687.961 kb on - strand at 688.015 kb on + strand, within SM_b21054 at 688.051 kb on - strand, within SM_b21054 at 688.190 kb on - strand, within SM_b21054 at 688.204 kb on - strand, within SM_b21054 at 688.204 kb on - strand, within SM_b21054 at 688.216 kb on + strand, within SM_b21054 at 688.217 kb on - strand, within SM_b21054 at 688.249 kb on + strand, within SM_b21054 at 688.250 kb on - strand, within SM_b21054 at 688.276 kb on + strand, within SM_b21054 at 688.286 kb on + strand, within SM_b21054 at 688.287 kb on - strand, within SM_b21054 at 688.302 kb on + strand, within SM_b21054 at 688.395 kb on + strand, within SM_b21054 at 688.406 kb on - strand, within SM_b21054 at 688.447 kb on + strand, within SM_b21054 at 688.518 kb on + strand at 688.518 kb on + strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.545 kb on - strand at 688.565 kb on + strand at 688.566 kb on - strand at 688.566 kb on - strand at 688.613 kb on + strand at 688.614 kb on - strand at 688.641 kb on - strand at 688.641 kb on - strand at 688.680 kb on + strand at 688.718 kb on + strand at 689.059 kb on + strand, within SM_b21055 at 689.059 kb on + strand, within SM_b21055 at 689.188 kb on + strand, within SM_b21055 at 689.188 kb on + strand, within SM_b21055 at 689.189 kb on - strand, within SM_b21055 at 689.193 kb on - strand, within SM_b21055 at 689.369 kb on + strand at 689.410 kb on - strand at 689.427 kb on + strand at 689.468 kb on + strand at 689.469 kb on - strand at 689.469 kb on - strand at 689.469 kb on - strand at 689.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 686,912 - SM_b21053 0.28 +1.1 686,912 - SM_b21053 0.28 -0.3 686,934 - SM_b21053 0.29 +3.5 686,956 - SM_b21053 0.31 +1.1 687,062 + SM_b21053 0.40 -1.9 687,062 + SM_b21053 0.40 -0.1 687,062 + SM_b21053 0.40 -0.4 687,191 + SM_b21053 0.50 +0.2 687,212 + SM_b21053 0.52 +0.1 687,242 + SM_b21053 0.54 +0.2 687,242 + SM_b21053 0.54 -0.1 687,304 + SM_b21053 0.59 -0.7 687,377 - SM_b21053 0.65 +0.3 687,401 - SM_b21053 0.67 +0.4 687,496 + SM_b21053 0.74 +0.6 687,497 - SM_b21053 0.74 -0.3 687,497 - SM_b21053 0.74 +1.3 687,514 - SM_b21053 0.76 +0.3 687,607 - SM_b21053 0.83 -0.4 687,607 - SM_b21053 0.83 +0.2 687,683 + SM_b21053 0.89 +0.2 687,684 - SM_b21053 0.89 -0.3 687,786 - -0.3 687,797 - -0.5 687,824 + -0.0 687,824 + +0.1 687,824 + +0.4 687,825 - +0.4 687,831 + -0.4 687,831 + -0.4 687,831 + -0.3 687,832 - +0.4 687,832 - -1.3 687,832 - -0.5 687,832 - -0.1 687,947 - -0.3 687,947 - -0.9 687,947 - +0.4 687,949 - -0.4 687,949 - -0.5 687,961 - -0.0 688,015 + SM_b21054 0.18 -0.5 688,051 - SM_b21054 0.24 -0.5 688,190 - SM_b21054 0.46 +0.5 688,204 - SM_b21054 0.48 -0.2 688,204 - SM_b21054 0.48 -0.5 688,216 + SM_b21054 0.50 -1.2 688,217 - SM_b21054 0.50 -0.5 688,249 + SM_b21054 0.56 -1.0 688,250 - SM_b21054 0.56 -1.4 688,276 + SM_b21054 0.60 -0.7 688,286 + SM_b21054 0.62 +0.7 688,287 - SM_b21054 0.62 +0.3 688,302 + SM_b21054 0.64 -0.8 688,395 + SM_b21054 0.79 -1.5 688,406 - SM_b21054 0.81 -0.7 688,447 + SM_b21054 0.88 +0.1 688,518 + -0.3 688,518 + +0.5 688,519 - -0.0 688,519 - -0.0 688,519 - -0.7 688,519 - +0.2 688,545 - -0.9 688,565 + -0.0 688,566 - +0.2 688,566 - +1.0 688,613 + -1.3 688,614 - -0.7 688,641 - -1.0 688,641 - +2.1 688,680 + -0.4 688,718 + +0.6 689,059 + SM_b21055 0.52 -2.0 689,059 + SM_b21055 0.52 +0.1 689,188 + SM_b21055 0.74 +0.1 689,188 + SM_b21055 0.74 +0.2 689,189 - SM_b21055 0.74 +0.0 689,193 - SM_b21055 0.75 -0.2 689,369 + +1.0 689,410 - -0.1 689,427 + -0.4 689,468 + +0.0 689,469 - +2.5 689,469 - +0.3 689,469 - -0.1 689,475 + -0.1
Or see this region's nucleotide sequence