Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20841 and SM_b20842 are separated by 347 nucleotides SM_b20842 and SM_b20843 are separated by 3 nucleotides
SM_b20841: SM_b20841 - hypothetical protein, at 631,879 to 633,090
_b20841
SM_b20842: SM_b20842 - TonB-dependent receptor protein, at 633,438 to 634,667
_b20842
SM_b20843: SM_b20843 - hypothetical protein, at 634,671 to 636,197
_b20843
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1 at 632.990 kb on + strand at 632.991 kb on - strand at 633.090 kb on + strand at 633.090 kb on + strand at 633.096 kb on + strand at 633.096 kb on + strand at 633.096 kb on + strand at 633.096 kb on + strand at 633.097 kb on - strand at 633.097 kb on - strand at 633.127 kb on + strand at 633.128 kb on - strand at 633.128 kb on - strand at 633.128 kb on - strand at 633.162 kb on - strand at 633.300 kb on - strand at 633.314 kb on - strand at 633.358 kb on + strand at 633.482 kb on - strand at 633.514 kb on + strand at 633.514 kb on + strand at 633.537 kb on - strand at 633.537 kb on - strand at 633.567 kb on - strand, within SM_b20842 at 633.730 kb on - strand, within SM_b20842 at 633.730 kb on - strand, within SM_b20842 at 633.745 kb on - strand, within SM_b20842 at 633.910 kb on + strand, within SM_b20842 at 633.911 kb on - strand, within SM_b20842 at 633.911 kb on - strand, within SM_b20842 at 634.046 kb on + strand, within SM_b20842 at 634.046 kb on + strand, within SM_b20842 at 634.047 kb on - strand, within SM_b20842 at 634.047 kb on - strand, within SM_b20842 at 634.102 kb on + strand, within SM_b20842 at 634.102 kb on + strand, within SM_b20842 at 634.103 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.263 kb on + strand, within SM_b20842 at 634.291 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.439 kb on - strand, within SM_b20842 at 634.439 kb on - strand, within SM_b20842 at 634.448 kb on - strand, within SM_b20842 at 634.448 kb on - strand, within SM_b20842 at 634.571 kb on + strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.673 kb on - strand at 634.712 kb on - strand at 634.799 kb on - strand at 634.813 kb on + strand at 634.814 kb on - strand at 634.814 kb on - strand at 634.867 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 635.273 kb on - strand, within SM_b20843 at 635.479 kb on + strand, within SM_b20843 at 635.568 kb on - strand, within SM_b20843
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 632,990 + -0.6 632,991 - +1.5 633,090 + -0.5 633,090 + +1.5 633,096 + -0.0 633,096 + +0.7 633,096 + +0.1 633,096 + -0.9 633,097 - +0.3 633,097 - -0.4 633,127 + -1.5 633,128 - +1.5 633,128 - +0.1 633,128 - +0.7 633,162 - -1.1 633,300 - -1.1 633,314 - -0.1 633,358 + +0.5 633,482 - +0.7 633,514 + -0.5 633,514 + +0.4 633,537 - -0.5 633,537 - +0.1 633,567 - SM_b20842 0.10 +1.0 633,730 - SM_b20842 0.24 +0.2 633,730 - SM_b20842 0.24 -0.1 633,745 - SM_b20842 0.25 +1.5 633,910 + SM_b20842 0.38 +0.8 633,911 - SM_b20842 0.38 -0.1 633,911 - SM_b20842 0.38 -0.6 634,046 + SM_b20842 0.49 -0.4 634,046 + SM_b20842 0.49 +0.1 634,047 - SM_b20842 0.50 +0.3 634,047 - SM_b20842 0.50 +0.4 634,102 + SM_b20842 0.54 +0.6 634,102 + SM_b20842 0.54 -2.7 634,103 - SM_b20842 0.54 -0.1 634,151 - SM_b20842 0.58 -0.3 634,151 - SM_b20842 0.58 +0.8 634,151 - SM_b20842 0.58 +1.4 634,258 + SM_b20842 0.67 +0.4 634,258 + SM_b20842 0.67 +0.6 634,258 + SM_b20842 0.67 +1.5 634,258 + SM_b20842 0.67 +0.0 634,263 + SM_b20842 0.67 +0.1 634,291 - SM_b20842 0.69 +0.4 634,307 - SM_b20842 0.71 +0.6 634,307 - SM_b20842 0.71 -0.2 634,307 - SM_b20842 0.71 +0.5 634,307 - SM_b20842 0.71 +0.7 634,307 - SM_b20842 0.71 -0.6 634,439 - SM_b20842 0.81 +0.2 634,439 - SM_b20842 0.81 +0.2 634,448 - SM_b20842 0.82 +0.1 634,448 - SM_b20842 0.82 -0.8 634,571 + -1.3 634,627 - -1.1 634,627 - -0.1 634,627 - -0.1 634,673 - -0.4 634,712 - -0.2 634,799 - -0.1 634,813 + -0.1 634,814 - +0.1 634,814 - -0.8 634,867 - SM_b20843 0.13 +1.4 634,871 - SM_b20843 0.13 -0.6 634,871 - SM_b20843 0.13 +0.1 634,871 - SM_b20843 0.13 -0.1 634,871 - SM_b20843 0.13 -0.1 635,273 - SM_b20843 0.39 -0.1 635,479 + SM_b20843 0.53 +0.0 635,568 - SM_b20843 0.59 +0.3
Or see this region's nucleotide sequence