Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20824 and SM_b20825 are separated by 164 nucleotides SM_b20825 and SM_b20826 are separated by 67 nucleotides SM_b20826 and SM_b20827 are separated by 223 nucleotides
SM_b20824: SM_b20824 - hypothetical protein, at 613,522 to 615,858
_b20824
SM_b20825: SM_b20825 - acetyltransferase, cysElacA/lpxA/nodL family protein, at 616,023 to 616,793
_b20825
SM_b20826: SM_b20826 - hypothetical protein, at 616,861 to 617,394
_b20826
SM_b20827: SM_b20827 - transposase, at 617,618 to 618,205
_b20827
Position (kb) 616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 615.096 kb on + strand, within SM_b20824 at 615.096 kb on + strand, within SM_b20824 at 615.097 kb on - strand, within SM_b20824 at 615.099 kb on - strand, within SM_b20824 at 615.162 kb on - strand, within SM_b20824 at 615.263 kb on + strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.303 kb on + strand, within SM_b20824 at 615.304 kb on - strand, within SM_b20824 at 615.522 kb on - strand, within SM_b20824 at 615.522 kb on - strand, within SM_b20824 at 615.548 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.644 kb on + strand at 615.644 kb on + strand at 615.645 kb on - strand at 615.647 kb on + strand at 615.647 kb on + strand at 615.648 kb on - strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.722 kb on - strand at 615.794 kb on - strand at 615.872 kb on + strand at 615.872 kb on + strand at 615.873 kb on - strand at 615.893 kb on + strand at 615.894 kb on - strand at 615.956 kb on + strand at 615.971 kb on - strand at 616.036 kb on + strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.058 kb on + strand at 616.058 kb on + strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.070 kb on + strand at 616.070 kb on + strand at 616.071 kb on - strand at 616.071 kb on - strand at 616.071 kb on - strand at 616.088 kb on + strand at 616.089 kb on - strand at 616.139 kb on + strand, within SM_b20825 at 616.140 kb on - strand at 616.191 kb on + strand, within SM_b20825 at 616.192 kb on - strand, within SM_b20825 at 616.290 kb on - strand, within SM_b20825 at 616.296 kb on - strand, within SM_b20825 at 616.296 kb on - strand, within SM_b20825 at 616.478 kb on + strand, within SM_b20825 at 616.479 kb on - strand, within SM_b20825 at 616.479 kb on - strand, within SM_b20825 at 616.535 kb on + strand, within SM_b20825 at 616.536 kb on - strand, within SM_b20825 at 616.554 kb on + strand, within SM_b20825 at 616.554 kb on + strand, within SM_b20825 at 616.555 kb on - strand, within SM_b20825 at 616.555 kb on - strand, within SM_b20825 at 616.697 kb on + strand, within SM_b20825 at 616.698 kb on - strand, within SM_b20825 at 616.740 kb on + strand at 616.763 kb on + strand at 616.858 kb on + strand at 616.859 kb on - strand at 616.859 kb on - strand at 616.990 kb on + strand, within SM_b20826 at 616.990 kb on + strand, within SM_b20826 at 616.990 kb on + strand, within SM_b20826 at 616.990 kb on + strand, within SM_b20826 at 617.035 kb on + strand, within SM_b20826 at 617.035 kb on + strand, within SM_b20826 at 617.054 kb on + strand, within SM_b20826 at 617.054 kb on + strand, within SM_b20826 at 617.115 kb on + strand, within SM_b20826 at 617.116 kb on - strand, within SM_b20826 at 617.302 kb on + strand, within SM_b20826 at 617.302 kb on + strand, within SM_b20826 at 617.303 kb on - strand, within SM_b20826 at 617.323 kb on + strand, within SM_b20826 at 617.323 kb on + strand, within SM_b20826 at 617.324 kb on - strand, within SM_b20826 at 617.328 kb on - strand, within SM_b20826 at 617.328 kb on - strand, within SM_b20826 at 617.403 kb on + strand at 617.403 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.457 kb on + strand at 617.549 kb on + strand at 617.549 kb on + strand at 617.660 kb on + strand at 617.660 kb on + strand at 617.661 kb on - strand at 617.669 kb on + strand at 617.670 kb on - strand at 617.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 615,096 + SM_b20824 0.67 -0.3 615,096 + SM_b20824 0.67 -0.7 615,097 - SM_b20824 0.67 +0.7 615,099 - SM_b20824 0.67 -0.3 615,162 - SM_b20824 0.70 +0.3 615,263 + SM_b20824 0.74 +0.4 615,264 - SM_b20824 0.75 -0.4 615,264 - SM_b20824 0.75 -0.4 615,264 - SM_b20824 0.75 +0.0 615,303 + SM_b20824 0.76 -0.4 615,304 - SM_b20824 0.76 +0.5 615,522 - SM_b20824 0.86 +1.8 615,522 - SM_b20824 0.86 -0.1 615,548 + SM_b20824 0.87 -0.2 615,571 + SM_b20824 0.88 -0.1 615,571 + SM_b20824 0.88 -0.9 615,571 + SM_b20824 0.88 -0.5 615,572 - SM_b20824 0.88 +1.1 615,572 - SM_b20824 0.88 -0.2 615,572 - SM_b20824 0.88 -0.8 615,644 + -0.3 615,644 + +1.0 615,645 - -0.4 615,647 + +0.1 615,647 + +0.3 615,648 - -0.4 615,721 + +0.5 615,721 + +0.2 615,721 + -1.1 615,721 + -0.5 615,721 + +0.5 615,721 + -0.7 615,721 + +0.8 615,722 - -0.2 615,794 - -3.1 615,872 + -1.5 615,872 + -0.9 615,873 - +1.0 615,893 + +0.0 615,894 - +1.2 615,956 + +0.5 615,971 - +0.8 616,036 + -0.9 616,037 - +1.0 616,037 - +0.7 616,037 - +0.3 616,037 - -0.1 616,037 - +0.2 616,058 + -1.2 616,058 + -0.7 616,059 - +0.0 616,059 - -1.9 616,059 - +0.2 616,059 - -0.3 616,070 + +0.1 616,070 + +0.2 616,071 - -0.3 616,071 - +0.5 616,071 - -0.6 616,088 + -0.3 616,089 - -1.1 616,139 + SM_b20825 0.15 -0.6 616,140 - +0.5 616,191 + SM_b20825 0.22 -0.6 616,192 - SM_b20825 0.22 -1.7 616,290 - SM_b20825 0.35 -0.1 616,296 - SM_b20825 0.35 +0.4 616,296 - SM_b20825 0.35 +0.1 616,478 + SM_b20825 0.59 +0.2 616,479 - SM_b20825 0.59 -1.2 616,479 - SM_b20825 0.59 +0.0 616,535 + SM_b20825 0.66 -0.1 616,536 - SM_b20825 0.67 -0.1 616,554 + SM_b20825 0.69 -2.2 616,554 + SM_b20825 0.69 -0.1 616,555 - SM_b20825 0.69 -0.8 616,555 - SM_b20825 0.69 -0.4 616,697 + SM_b20825 0.87 -0.9 616,698 - SM_b20825 0.88 -0.6 616,740 + -0.7 616,763 + -0.4 616,858 + +0.2 616,859 - +0.2 616,859 - -0.5 616,990 + SM_b20826 0.24 +0.4 616,990 + SM_b20826 0.24 -0.9 616,990 + SM_b20826 0.24 -1.7 616,990 + SM_b20826 0.24 -0.3 617,035 + SM_b20826 0.33 -0.8 617,035 + SM_b20826 0.33 -0.3 617,054 + SM_b20826 0.36 -0.0 617,054 + SM_b20826 0.36 +1.0 617,115 + SM_b20826 0.48 +0.1 617,116 - SM_b20826 0.48 -0.4 617,302 + SM_b20826 0.83 +0.4 617,302 + SM_b20826 0.83 -0.2 617,303 - SM_b20826 0.83 -0.4 617,323 + SM_b20826 0.87 +0.6 617,323 + SM_b20826 0.87 -0.4 617,324 - SM_b20826 0.87 -0.5 617,328 - SM_b20826 0.87 +0.2 617,328 - SM_b20826 0.87 -1.6 617,403 + -0.2 617,403 + -1.0 617,454 + +0.0 617,454 + -1.3 617,454 + +0.1 617,454 + +0.0 617,454 + -0.5 617,454 + +1.5 617,457 + -0.0 617,549 + -0.2 617,549 + -0.4 617,660 + -0.0 617,660 + -0.2 617,661 - -0.8 617,669 + +0.2 617,670 - +0.2 617,670 - +1.2
Or see this region's nucleotide sequence