Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS26180 and RS_RS26185 are separated by 525 nucleotides RS_RS26185 and RS_RS26190 are separated by 27 nucleotides RS_RS26190 and RS_RS19960 are separated by 13 nucleotides RS_RS19960 and RS_RS19965 are separated by 148 nucleotides RS_RS19965 and RS_RS19970 are separated by 252 nucleotides
RS_RS26180: RS_RS26180 - hypothetical protein, at 727,803 to 728,000
_RS26180
RS_RS26185: RS_RS26185 - hypothetical protein, at 728,526 to 728,684
_RS26185
RS_RS26190: RS_RS26190 - resolvase, at 728,712 to 728,846
_RS26190
RS_RS19960: RS_RS19960 - MBL fold metallo-hydrolase, at 728,860 to 729,240
_RS19960
RS_RS19965: RS_RS19965 - MBL fold metallo-hydrolase, at 729,389 to 729,856
_RS19965
RS_RS19970: RS_RS19970 - VOC family protein, at 730,109 to 730,606
_RS19970
Position (kb) 728
729
730 Strain fitness (log2 ratio) -2
-1
0
1
2 at 728.042 kb on + strand at 728.043 kb on - strand at 728.043 kb on - strand at 728.105 kb on + strand at 728.106 kb on - strand at 728.137 kb on + strand at 728.137 kb on + strand at 728.138 kb on - strand at 728.138 kb on - strand at 728.377 kb on - strand at 728.377 kb on - strand at 728.469 kb on + strand at 728.469 kb on + strand at 728.469 kb on + strand at 728.469 kb on + strand at 728.469 kb on + strand at 728.470 kb on - strand at 728.470 kb on - strand at 728.472 kb on + strand at 728.473 kb on - strand at 728.605 kb on - strand, within RS_RS26185 at 728.605 kb on - strand, within RS_RS26185 at 728.793 kb on + strand, within RS_RS26190 at 728.794 kb on - strand, within RS_RS26190 at 728.794 kb on - strand, within RS_RS26190 at 728.867 kb on + strand at 728.867 kb on + strand at 728.867 kb on + strand at 728.867 kb on + strand at 728.867 kb on + strand at 728.867 kb on + strand at 728.867 kb on + strand at 728.868 kb on - strand at 728.868 kb on - strand at 728.870 kb on + strand at 728.941 kb on + strand, within RS_RS19960 at 729.263 kb on - strand at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.475 kb on - strand, within RS_RS19965 at 729.475 kb on - strand, within RS_RS19965 at 729.475 kb on - strand, within RS_RS19965 at 729.602 kb on + strand, within RS_RS19965 at 729.603 kb on - strand, within RS_RS19965 at 729.603 kb on - strand, within RS_RS19965 at 729.603 kb on - strand, within RS_RS19965 at 729.603 kb on - strand, within RS_RS19965 at 729.611 kb on - strand, within RS_RS19965 at 729.648 kb on + strand, within RS_RS19965 at 729.648 kb on + strand, within RS_RS19965 at 729.649 kb on - strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.977 kb on - strand at 730.227 kb on - strand, within RS_RS19970 at 730.227 kb on - strand, within RS_RS19970
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days remove 728,042 + -0.6 728,043 - -0.3 728,043 - +1.0 728,105 + +0.1 728,106 - +0.1 728,137 + +0.4 728,137 + +0.3 728,138 - -0.6 728,138 - -0.7 728,377 - -0.1 728,377 - +0.0 728,469 + +0.9 728,469 + -0.0 728,469 + +0.5 728,469 + +0.4 728,469 + +0.1 728,470 - +0.4 728,470 - -1.1 728,472 + +0.3 728,473 - +0.1 728,605 - RS_RS26185 0.50 +0.3 728,605 - RS_RS26185 0.50 -0.5 728,793 + RS_RS26190 0.60 +0.2 728,794 - RS_RS26190 0.61 -0.3 728,794 - RS_RS26190 0.61 +0.4 728,867 + -0.4 728,867 + +1.3 728,867 + +0.1 728,867 + -0.0 728,867 + +0.5 728,867 + -0.5 728,867 + +0.4 728,868 - +0.3 728,868 - +0.2 728,870 + +0.2 728,941 + RS_RS19960 0.21 +2.4 729,263 - -0.4 729,474 + RS_RS19965 0.18 +0.3 729,474 + RS_RS19965 0.18 -0.2 729,474 + RS_RS19965 0.18 +0.7 729,474 + RS_RS19965 0.18 -0.2 729,474 + RS_RS19965 0.18 -0.4 729,474 + RS_RS19965 0.18 +0.0 729,474 + RS_RS19965 0.18 +0.3 729,474 + RS_RS19965 0.18 +0.7 729,475 - RS_RS19965 0.18 -0.3 729,475 - RS_RS19965 0.18 -0.1 729,475 - RS_RS19965 0.18 +0.4 729,602 + RS_RS19965 0.46 +0.2 729,603 - RS_RS19965 0.46 +0.1 729,603 - RS_RS19965 0.46 +0.1 729,603 - RS_RS19965 0.46 -0.3 729,603 - RS_RS19965 0.46 +0.6 729,611 - RS_RS19965 0.47 +0.1 729,648 + RS_RS19965 0.55 +0.4 729,648 + RS_RS19965 0.55 -0.1 729,649 - RS_RS19965 0.56 +0.0 729,744 + RS_RS19965 0.76 +0.1 729,744 + RS_RS19965 0.76 -0.1 729,744 + RS_RS19965 0.76 +0.6 729,744 + RS_RS19965 0.76 +1.1 729,744 + RS_RS19965 0.76 +0.1 729,744 + RS_RS19965 0.76 -0.1 729,744 + RS_RS19965 0.76 -1.8 729,745 - RS_RS19965 0.76 -0.7 729,745 - RS_RS19965 0.76 +0.1 729,745 - RS_RS19965 0.76 -0.1 729,745 - RS_RS19965 0.76 +0.4 729,745 - RS_RS19965 0.76 -0.1 729,977 - +0.3 730,227 - RS_RS19970 0.24 -0.8 730,227 - RS_RS19970 0.24 -0.5
Or see this region's nucleotide sequence