Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS04845

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS04840 and RS_RS04845 are separated by 5 nucleotidesRS_RS04845 and RS_RS04850 overlap by 19 nucleotidesRS_RS04850 and RS_RS04855 are separated by 85 nucleotides RS_RS04840: RS_RS04840 - DNA topoisomerase IV subunit A, at 1,027,781 to 1,030,126 _RS04840 RS_RS04845: RS_RS04845 - chromate transporter, at 1,030,132 to 1,030,713 _RS04845 RS_RS04850: RS_RS04850 - chromate transporter, at 1,030,695 to 1,031,240 _RS04850 RS_RS04855: RS_RS04855 - L-lactate permease, at 1,031,326 to 1,033,014 _RS04855 Position (kb) 1030 1031Strain fitness (log2 ratio) -2 -1 0 1at 1030.480 kb on + strand, within RS_RS04845at 1030.481 kb on - strand, within RS_RS04845at 1030.481 kb on - strand, within RS_RS04845at 1030.833 kb on + strand, within RS_RS04850at 1030.833 kb on + strand, within RS_RS04850at 1030.834 kb on - strand, within RS_RS04850at 1030.834 kb on - strand, within RS_RS04850at 1030.863 kb on + strand, within RS_RS04850at 1030.863 kb on + strand, within RS_RS04850at 1030.863 kb on + strand, within RS_RS04850at 1030.863 kb on + strand, within RS_RS04850at 1030.863 kb on + strand, within RS_RS04850at 1030.863 kb on + strand, within RS_RS04850at 1030.864 kb on - strand, within RS_RS04850at 1030.864 kb on - strand, within RS_RS04850at 1030.864 kb on - strand, within RS_RS04850at 1031.239 kb on - strandat 1031.369 kb on + strandat 1031.432 kb on + strandat 1031.432 kb on + strandat 1031.675 kb on + strand, within RS_RS04855at 1031.676 kb on - strand, within RS_RS04855

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
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1,030,480 + RS_RS04845 0.60 -0.5
1,030,481 - RS_RS04845 0.60 -0.6
1,030,481 - RS_RS04845 0.60 -0.4
1,030,833 + RS_RS04850 0.25 +0.4
1,030,833 + RS_RS04850 0.25 -0.7
1,030,834 - RS_RS04850 0.25 +0.4
1,030,834 - RS_RS04850 0.25 -2.1
1,030,863 + RS_RS04850 0.31 +0.5
1,030,863 + RS_RS04850 0.31 +0.2
1,030,863 + RS_RS04850 0.31 +0.2
1,030,863 + RS_RS04850 0.31 +0.1
1,030,863 + RS_RS04850 0.31 -1.5
1,030,863 + RS_RS04850 0.31 +0.2
1,030,864 - RS_RS04850 0.31 -0.8
1,030,864 - RS_RS04850 0.31 +0.0
1,030,864 - RS_RS04850 0.31 +1.6
1,031,239 - -0.4
1,031,369 + -0.1
1,031,432 + -0.3
1,031,432 + -0.8
1,031,675 + RS_RS04855 0.21 +0.9
1,031,676 - RS_RS04855 0.21 -0.4

Or see this region's nucleotide sequence