Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03890 and RS_RS03895 are separated by 101 nucleotides RS_RS03895 and RS_RS03900 are separated by 104 nucleotides
RS_RS03890: RS_RS03890 - AsmA family protein, at 816,559 to 818,781
_RS03890
RS_RS03895: RS_RS03895 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 818,883 to 819,785
_RS03895
RS_RS03900: RS_RS03900 - catalase/peroxidase HPI, at 819,890 to 822,063
_RS03900
Position (kb) 818
819
820 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 818.069 kb on + strand, within RS_RS03890 at 818.070 kb on - strand, within RS_RS03890 at 818.070 kb on - strand, within RS_RS03890 at 818.070 kb on - strand, within RS_RS03890 at 818.070 kb on - strand, within RS_RS03890 at 818.207 kb on + strand, within RS_RS03890 at 818.208 kb on - strand, within RS_RS03890 at 818.208 kb on - strand, within RS_RS03890 at 818.568 kb on - strand at 818.847 kb on + strand at 818.847 kb on + strand at 818.847 kb on + strand at 818.848 kb on - strand at 818.848 kb on - strand at 818.848 kb on - strand at 818.849 kb on + strand at 818.849 kb on + strand at 818.850 kb on - strand at 818.850 kb on - strand at 818.851 kb on + strand at 818.851 kb on + strand at 818.851 kb on + strand at 818.851 kb on + strand at 818.852 kb on - strand at 818.872 kb on + strand at 818.938 kb on - strand at 819.283 kb on - strand, within RS_RS03895 at 819.525 kb on + strand, within RS_RS03895 at 819.891 kb on + strand at 820.308 kb on + strand, within RS_RS03900 at 820.308 kb on + strand, within RS_RS03900 at 820.308 kb on + strand, within RS_RS03900 at 820.308 kb on + strand, within RS_RS03900 at 820.309 kb on - strand, within RS_RS03900 at 820.323 kb on + strand, within RS_RS03900 at 820.324 kb on - strand, within RS_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days remove 818,069 + RS_RS03890 0.68 -0.3 818,070 - RS_RS03890 0.68 -0.2 818,070 - RS_RS03890 0.68 +0.1 818,070 - RS_RS03890 0.68 -0.5 818,070 - RS_RS03890 0.68 +0.3 818,207 + RS_RS03890 0.74 +0.0 818,208 - RS_RS03890 0.74 -0.7 818,208 - RS_RS03890 0.74 +1.5 818,568 - -0.6 818,847 + +1.0 818,847 + +0.4 818,847 + +0.1 818,848 - -0.2 818,848 - -0.4 818,848 - +0.2 818,849 + -0.5 818,849 + +1.5 818,850 - +0.1 818,850 - -0.4 818,851 + +1.7 818,851 + -0.7 818,851 + +0.9 818,851 + -0.4 818,852 - +0.6 818,872 + +0.0 818,938 - -0.8 819,283 - RS_RS03895 0.44 +2.9 819,525 + RS_RS03895 0.71 +0.4 819,891 + +2.2 820,308 + RS_RS03900 0.19 -1.4 820,308 + RS_RS03900 0.19 -2.7 820,308 + RS_RS03900 0.19 -2.2 820,308 + RS_RS03900 0.19 -1.2 820,309 - RS_RS03900 0.19 -2.0 820,323 + RS_RS03900 0.20 -0.4 820,324 - RS_RS03900 0.20 -1.7
Or see this region's nucleotide sequence