Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02225

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02220 and RS_RS02225 are separated by 28 nucleotidesRS_RS02225 and RS_RS02230 are separated by 141 nucleotides RS_RS02220: RS_RS02220 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 476,091 to 476,924 _RS02220 RS_RS02225: RS_RS02225 - threonine ammonia-lyase, biosynthetic, at 476,953 to 478,476 _RS02225 RS_RS02230: RS_RS02230 - potassium channel protein, at 478,618 to 479,541 _RS02230 Position (kb) 476 477 478 479Strain fitness (log2 ratio) -3 -2 -1 0 1at 475.953 kb on - strandat 476.011 kb on + strandat 476.092 kb on + strandat 476.177 kb on + strand, within RS_RS02220at 476.178 kb on - strand, within RS_RS02220at 476.179 kb on + strand, within RS_RS02220at 476.291 kb on - strand, within RS_RS02220at 476.330 kb on - strand, within RS_RS02220at 476.761 kb on + strand, within RS_RS02220at 476.869 kb on + strandat 478.595 kb on + strandat 478.596 kb on - strandat 478.729 kb on + strand, within RS_RS02230at 478.730 kb on - strand, within RS_RS02230at 478.730 kb on - strand, within RS_RS02230at 479.185 kb on + strand, within RS_RS02230at 479.186 kb on - strand, within RS_RS02230at 479.194 kb on + strand, within RS_RS02230at 479.195 kb on - strand, within RS_RS02230at 479.428 kb on + strand, within RS_RS02230at 479.429 kb on - strand, within RS_RS02230

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
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475,953 - -1.2
476,011 + +0.5
476,092 + -0.7
476,177 + RS_RS02220 0.10 -2.2
476,178 - RS_RS02220 0.10 -2.6
476,179 + RS_RS02220 0.11 -1.7
476,291 - RS_RS02220 0.24 -1.5
476,330 - RS_RS02220 0.29 -1.9
476,761 + RS_RS02220 0.80 -2.9
476,869 + -2.5
478,595 + -0.7
478,596 - -0.3
478,729 + RS_RS02230 0.12 +0.1
478,730 - RS_RS02230 0.12 -0.8
478,730 - RS_RS02230 0.12 +1.5
479,185 + RS_RS02230 0.61 -0.2
479,186 - RS_RS02230 0.61 -0.6
479,194 + RS_RS02230 0.62 +0.7
479,195 - RS_RS02230 0.62 -1.0
479,428 + RS_RS02230 0.88 +0.7
479,429 - RS_RS02230 0.88 +0.3

Or see this region's nucleotide sequence