Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19875 and RALBFv3_RS24465 overlap by 4 nucleotides RALBFv3_RS24465 and RALBFv3_RS19880 overlap by 103 nucleotides RALBFv3_RS19880 and RALBFv3_RS19885 are separated by 7 nucleotides RALBFv3_RS19885 and RALBFv3_RS19890 are separated by 169 nucleotides
RALBFv3_RS19875: RALBFv3_RS19875 - hypothetical protein, at 1,141,563 to 1,143,299
_RS19875
RALBFv3_RS24465: RALBFv3_RS24465 - hypothetical protein, at 1,143,296 to 1,143,556
_RS24465
RALBFv3_RS19880: RALBFv3_RS19880 - ferredoxin family protein, at 1,143,454 to 1,143,810
_RS19880
RALBFv3_RS19885: RALBFv3_RS19885 - DUF962 domain-containing protein, at 1,143,818 to 1,144,351
_RS19885
RALBFv3_RS19890: RALBFv3_RS19890 - Crp/Fnr family transcriptional regulator, at 1,144,521 to 1,145,240
_RS19890
Position (kb) 1143
1144 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1142.371 kb on - strand, within RALBFv3_RS19875 at 1142.413 kb on - strand, within RALBFv3_RS19875 at 1142.574 kb on + strand, within RALBFv3_RS19875 at 1142.574 kb on + strand, within RALBFv3_RS19875 at 1142.575 kb on - strand, within RALBFv3_RS19875 at 1142.575 kb on - strand, within RALBFv3_RS19875 at 1142.595 kb on + strand, within RALBFv3_RS19875 at 1142.596 kb on - strand, within RALBFv3_RS19875 at 1142.700 kb on + strand, within RALBFv3_RS19875 at 1142.700 kb on + strand, within RALBFv3_RS19875 at 1142.700 kb on + strand, within RALBFv3_RS19875 at 1142.701 kb on - strand, within RALBFv3_RS19875 at 1142.701 kb on - strand, within RALBFv3_RS19875 at 1142.701 kb on - strand, within RALBFv3_RS19875 at 1142.706 kb on + strand, within RALBFv3_RS19875 at 1142.707 kb on - strand, within RALBFv3_RS19875 at 1142.827 kb on - strand, within RALBFv3_RS19875 at 1142.934 kb on + strand, within RALBFv3_RS19875 at 1142.938 kb on - strand, within RALBFv3_RS19875 at 1143.097 kb on - strand, within RALBFv3_RS19875 at 1143.097 kb on - strand, within RALBFv3_RS19875 at 1143.151 kb on - strand at 1143.460 kb on + strand at 1143.461 kb on - strand at 1143.493 kb on + strand at 1143.494 kb on - strand at 1143.619 kb on + strand, within RALBFv3_RS19880 at 1143.620 kb on - strand, within RALBFv3_RS19880 at 1143.769 kb on - strand, within RALBFv3_RS19880 at 1143.809 kb on - strand at 1143.809 kb on - strand at 1143.932 kb on + strand, within RALBFv3_RS19885 at 1144.152 kb on + strand, within RALBFv3_RS19885 at 1144.153 kb on - strand, within RALBFv3_RS19885 at 1144.153 kb on - strand, within RALBFv3_RS19885 at 1144.311 kb on + strand at 1144.321 kb on - strand at 1144.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,142,371 - RALBFv3_RS19875 0.47 -1.5 1,142,413 - RALBFv3_RS19875 0.49 -0.2 1,142,574 + RALBFv3_RS19875 0.58 -1.8 1,142,574 + RALBFv3_RS19875 0.58 +0.6 1,142,575 - RALBFv3_RS19875 0.58 +1.1 1,142,575 - RALBFv3_RS19875 0.58 -0.9 1,142,595 + RALBFv3_RS19875 0.59 -2.0 1,142,596 - RALBFv3_RS19875 0.59 +0.6 1,142,700 + RALBFv3_RS19875 0.65 +1.0 1,142,700 + RALBFv3_RS19875 0.65 -1.1 1,142,700 + RALBFv3_RS19875 0.65 -2.1 1,142,701 - RALBFv3_RS19875 0.66 -1.4 1,142,701 - RALBFv3_RS19875 0.66 -1.7 1,142,701 - RALBFv3_RS19875 0.66 +1.0 1,142,706 + RALBFv3_RS19875 0.66 -0.8 1,142,707 - RALBFv3_RS19875 0.66 -1.1 1,142,827 - RALBFv3_RS19875 0.73 -1.3 1,142,934 + RALBFv3_RS19875 0.79 -0.3 1,142,938 - RALBFv3_RS19875 0.79 -0.5 1,143,097 - RALBFv3_RS19875 0.88 +0.7 1,143,097 - RALBFv3_RS19875 0.88 -0.4 1,143,151 - -0.8 1,143,460 + -1.0 1,143,461 - +1.0 1,143,493 + -0.7 1,143,494 - +0.6 1,143,619 + RALBFv3_RS19880 0.46 -1.1 1,143,620 - RALBFv3_RS19880 0.46 -2.7 1,143,769 - RALBFv3_RS19880 0.88 +0.6 1,143,809 - +1.8 1,143,809 - -2.4 1,143,932 + RALBFv3_RS19885 0.21 -0.2 1,144,152 + RALBFv3_RS19885 0.63 +1.3 1,144,153 - RALBFv3_RS19885 0.63 +2.6 1,144,153 - RALBFv3_RS19885 0.63 +0.9 1,144,311 + +0.1 1,144,321 - -0.2 1,144,424 + -1.1
Or see this region's nucleotide sequence