Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS21695

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS21690 and RALBFv3_RS21695 are separated by 78 nucleotidesRALBFv3_RS21695 and RALBFv3_RS21700 are separated by 117 nucleotides RALBFv3_RS21690: RALBFv3_RS21690 - flagellar hook-associated protein 3, at 1,592,894 to 1,593,844 _RS21690 RALBFv3_RS21695: RALBFv3_RS21695 - flagellar hook-associated protein FlgK, at 1,593,923 to 1,595,851 _RS21695 RALBFv3_RS21700: RALBFv3_RS21700 - flagellar assembly peptidoglycan hydrolase FlgJ, at 1,595,969 to 1,597,051 _RS21700 Position (kb) 1593 1594 1595 1596Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1593.003 kb on + strand, within RALBFv3_RS21690at 1593.004 kb on - strand, within RALBFv3_RS21690at 1593.238 kb on - strand, within RALBFv3_RS21690at 1593.238 kb on - strand, within RALBFv3_RS21690at 1593.238 kb on - strand, within RALBFv3_RS21690at 1593.381 kb on + strand, within RALBFv3_RS21690at 1593.381 kb on + strand, within RALBFv3_RS21690at 1593.493 kb on - strand, within RALBFv3_RS21690at 1593.550 kb on + strand, within RALBFv3_RS21690at 1593.551 kb on - strand, within RALBFv3_RS21690at 1593.833 kb on - strandat 1593.888 kb on + strandat 1593.889 kb on - strandat 1594.329 kb on + strand, within RALBFv3_RS21695at 1594.329 kb on + strand, within RALBFv3_RS21695at 1594.330 kb on - strand, within RALBFv3_RS21695at 1594.345 kb on + strand, within RALBFv3_RS21695at 1594.345 kb on + strand, within RALBFv3_RS21695at 1594.346 kb on - strand, within RALBFv3_RS21695at 1594.365 kb on + strand, within RALBFv3_RS21695at 1594.365 kb on + strand, within RALBFv3_RS21695at 1594.366 kb on - strand, within RALBFv3_RS21695at 1594.366 kb on - strand, within RALBFv3_RS21695at 1594.434 kb on + strand, within RALBFv3_RS21695at 1594.435 kb on - strand, within RALBFv3_RS21695at 1594.474 kb on - strand, within RALBFv3_RS21695at 1594.474 kb on - strand, within RALBFv3_RS21695at 1594.569 kb on + strand, within RALBFv3_RS21695at 1594.569 kb on + strand, within RALBFv3_RS21695at 1594.569 kb on + strand, within RALBFv3_RS21695at 1594.570 kb on - strand, within RALBFv3_RS21695at 1594.740 kb on + strand, within RALBFv3_RS21695at 1594.740 kb on + strand, within RALBFv3_RS21695at 1594.741 kb on - strand, within RALBFv3_RS21695at 1594.756 kb on - strand, within RALBFv3_RS21695at 1594.767 kb on + strand, within RALBFv3_RS21695at 1594.768 kb on - strand, within RALBFv3_RS21695at 1594.921 kb on + strand, within RALBFv3_RS21695at 1594.921 kb on + strand, within RALBFv3_RS21695at 1594.922 kb on - strand, within RALBFv3_RS21695at 1594.922 kb on - strand, within RALBFv3_RS21695at 1595.044 kb on + strand, within RALBFv3_RS21695at 1595.070 kb on + strand, within RALBFv3_RS21695at 1595.070 kb on + strand, within RALBFv3_RS21695at 1595.097 kb on + strand, within RALBFv3_RS21695at 1595.098 kb on - strand, within RALBFv3_RS21695at 1595.098 kb on - strand, within RALBFv3_RS21695at 1595.124 kb on + strand, within RALBFv3_RS21695at 1595.124 kb on + strand, within RALBFv3_RS21695at 1595.125 kb on - strand, within RALBFv3_RS21695at 1595.166 kb on + strand, within RALBFv3_RS21695at 1595.167 kb on - strand, within RALBFv3_RS21695at 1595.167 kb on - strand, within RALBFv3_RS21695at 1595.175 kb on + strand, within RALBFv3_RS21695at 1595.175 kb on + strand, within RALBFv3_RS21695at 1595.175 kb on + strand, within RALBFv3_RS21695at 1595.176 kb on - strand, within RALBFv3_RS21695at 1595.311 kb on + strand, within RALBFv3_RS21695at 1595.556 kb on + strand, within RALBFv3_RS21695at 1595.556 kb on + strand, within RALBFv3_RS21695at 1595.557 kb on - strand, within RALBFv3_RS21695at 1595.558 kb on - strand, within RALBFv3_RS21695at 1595.649 kb on + strand, within RALBFv3_RS21695at 1595.649 kb on + strand, within RALBFv3_RS21695at 1595.649 kb on + strand, within RALBFv3_RS21695at 1595.649 kb on + strand, within RALBFv3_RS21695at 1595.649 kb on + strand, within RALBFv3_RS21695at 1595.650 kb on - strand, within RALBFv3_RS21695at 1595.650 kb on - strand, within RALBFv3_RS21695at 1595.650 kb on - strand, within RALBFv3_RS21695at 1595.748 kb on + strandat 1595.895 kb on + strandat 1595.942 kb on - strandat 1595.966 kb on - strandat 1595.966 kb on - strandat 1595.966 kb on - strandat 1596.009 kb on + strandat 1596.009 kb on + strandat 1596.009 kb on + strandat 1596.009 kb on + strandat 1596.009 kb on + strandat 1596.010 kb on - strandat 1596.099 kb on + strand, within RALBFv3_RS21700at 1596.129 kb on + strand, within RALBFv3_RS21700at 1596.129 kb on + strand, within RALBFv3_RS21700at 1596.130 kb on - strand, within RALBFv3_RS21700at 1596.130 kb on - strand, within RALBFv3_RS21700at 1596.151 kb on - strand, within RALBFv3_RS21700at 1596.151 kb on - strand, within RALBFv3_RS21700at 1596.204 kb on + strand, within RALBFv3_RS21700at 1596.409 kb on - strand, within RALBFv3_RS21700at 1596.409 kb on - strand, within RALBFv3_RS21700at 1596.844 kb on + strand, within RALBFv3_RS21700at 1596.845 kb on - strand, within RALBFv3_RS21700at 1596.845 kb on - strand, within RALBFv3_RS21700at 1596.845 kb on - strand, within RALBFv3_RS21700at 1596.846 kb on + strand, within RALBFv3_RS21700

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,593,003 + RALBFv3_RS21690 0.11 +0.1
1,593,004 - RALBFv3_RS21690 0.12 +0.1
1,593,238 - RALBFv3_RS21690 0.36 -1.2
1,593,238 - RALBFv3_RS21690 0.36 +0.4
1,593,238 - RALBFv3_RS21690 0.36 +1.4
1,593,381 + RALBFv3_RS21690 0.51 -0.7
1,593,381 + RALBFv3_RS21690 0.51 -0.7
1,593,493 - RALBFv3_RS21690 0.63 +1.3
1,593,550 + RALBFv3_RS21690 0.69 -1.4
1,593,551 - RALBFv3_RS21690 0.69 -0.9
1,593,833 - +0.5
1,593,888 + -0.2
1,593,889 - -1.9
1,594,329 + RALBFv3_RS21695 0.21 -0.8
1,594,329 + RALBFv3_RS21695 0.21 -0.2
1,594,330 - RALBFv3_RS21695 0.21 -0.2
1,594,345 + RALBFv3_RS21695 0.22 +0.6
1,594,345 + RALBFv3_RS21695 0.22 -0.2
1,594,346 - RALBFv3_RS21695 0.22 +0.5
1,594,365 + RALBFv3_RS21695 0.23 +0.1
1,594,365 + RALBFv3_RS21695 0.23 -1.3
1,594,366 - RALBFv3_RS21695 0.23 -0.2
1,594,366 - RALBFv3_RS21695 0.23 -0.8
1,594,434 + RALBFv3_RS21695 0.26 -0.6
1,594,435 - RALBFv3_RS21695 0.27 -1.2
1,594,474 - RALBFv3_RS21695 0.29 +1.2
1,594,474 - RALBFv3_RS21695 0.29 -0.9
1,594,569 + RALBFv3_RS21695 0.33 +0.7
1,594,569 + RALBFv3_RS21695 0.33 -0.5
1,594,569 + RALBFv3_RS21695 0.33 +0.7
1,594,570 - RALBFv3_RS21695 0.34 +0.4
1,594,740 + RALBFv3_RS21695 0.42 -0.2
1,594,740 + RALBFv3_RS21695 0.42 -0.3
1,594,741 - RALBFv3_RS21695 0.42 +1.6
1,594,756 - RALBFv3_RS21695 0.43 -0.4
1,594,767 + RALBFv3_RS21695 0.44 +0.0
1,594,768 - RALBFv3_RS21695 0.44 -0.6
1,594,921 + RALBFv3_RS21695 0.52 +2.6
1,594,921 + RALBFv3_RS21695 0.52 +1.8
1,594,922 - RALBFv3_RS21695 0.52 +1.4
1,594,922 - RALBFv3_RS21695 0.52 -0.1
1,595,044 + RALBFv3_RS21695 0.58 -0.8
1,595,070 + RALBFv3_RS21695 0.59 -0.7
1,595,070 + RALBFv3_RS21695 0.59 -0.1
1,595,097 + RALBFv3_RS21695 0.61 -0.1
1,595,098 - RALBFv3_RS21695 0.61 +0.9
1,595,098 - RALBFv3_RS21695 0.61 +0.8
1,595,124 + RALBFv3_RS21695 0.62 -1.4
1,595,124 + RALBFv3_RS21695 0.62 -0.2
1,595,125 - RALBFv3_RS21695 0.62 -2.5
1,595,166 + RALBFv3_RS21695 0.64 +0.7
1,595,167 - RALBFv3_RS21695 0.64 +0.8
1,595,167 - RALBFv3_RS21695 0.64 +0.6
1,595,175 + RALBFv3_RS21695 0.65 +0.0
1,595,175 + RALBFv3_RS21695 0.65 +2.8
1,595,175 + RALBFv3_RS21695 0.65 +0.8
1,595,176 - RALBFv3_RS21695 0.65 +2.3
1,595,311 + RALBFv3_RS21695 0.72 +1.1
1,595,556 + RALBFv3_RS21695 0.85 -0.3
1,595,556 + RALBFv3_RS21695 0.85 -1.1
1,595,557 - RALBFv3_RS21695 0.85 +0.1
1,595,558 - RALBFv3_RS21695 0.85 +3.8
1,595,649 + RALBFv3_RS21695 0.89 +0.5
1,595,649 + RALBFv3_RS21695 0.89 +1.9
1,595,649 + RALBFv3_RS21695 0.89 +0.3
1,595,649 + RALBFv3_RS21695 0.89 +0.6
1,595,649 + RALBFv3_RS21695 0.89 -0.0
1,595,650 - RALBFv3_RS21695 0.90 +2.6
1,595,650 - RALBFv3_RS21695 0.90 -0.6
1,595,650 - RALBFv3_RS21695 0.90 +1.4
1,595,748 + -0.1
1,595,895 + +0.2
1,595,942 - -0.4
1,595,966 - +0.2
1,595,966 - -1.4
1,595,966 - -0.9
1,596,009 + +0.8
1,596,009 + +0.9
1,596,009 + -2.2
1,596,009 + -0.8
1,596,009 + -0.7
1,596,010 - +0.4
1,596,099 + RALBFv3_RS21700 0.12 +0.9
1,596,129 + RALBFv3_RS21700 0.15 +0.8
1,596,129 + RALBFv3_RS21700 0.15 -0.6
1,596,130 - RALBFv3_RS21700 0.15 +1.0
1,596,130 - RALBFv3_RS21700 0.15 +0.2
1,596,151 - RALBFv3_RS21700 0.17 -0.4
1,596,151 - RALBFv3_RS21700 0.17 -0.5
1,596,204 + RALBFv3_RS21700 0.22 +0.6
1,596,409 - RALBFv3_RS21700 0.41 -1.1
1,596,409 - RALBFv3_RS21700 0.41 -1.4
1,596,844 + RALBFv3_RS21700 0.81 -0.1
1,596,845 - RALBFv3_RS21700 0.81 +2.3
1,596,845 - RALBFv3_RS21700 0.81 +0.5
1,596,845 - RALBFv3_RS21700 0.81 -0.5
1,596,846 + RALBFv3_RS21700 0.81 -0.4

Or see this region's nucleotide sequence