Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS21220 and RALBFv3_RS21225 are separated by 249 nucleotides RALBFv3_RS21225 and RALBFv3_RS21230 are separated by 71 nucleotides RALBFv3_RS21230 and RALBFv3_RS21235 are separated by 144 nucleotides RALBFv3_RS21235 and RALBFv3_RS21240 are separated by 13 nucleotides
RALBFv3_RS21220: RALBFv3_RS21220 - glycine zipper 2TM domain-containing protein, at 1,483,737 to 1,484,465
_RS21220
RALBFv3_RS21225: RALBFv3_RS21225 - 2-hydroxyacid dehydrogenase, at 1,484,715 to 1,485,647
_RS21225
RALBFv3_RS21230: RALBFv3_RS21230 - hypothetical protein, at 1,485,719 to 1,485,982
_RS21230
RALBFv3_RS21235: RALBFv3_RS21235 - HIT family protein, at 1,486,127 to 1,486,561
_RS21235
RALBFv3_RS21240: RALBFv3_RS21240 - CusA/CzcA family heavy metal efflux RND transporter, at 1,486,575 to 1,489,769
_RS21240
Position (kb) 1484
1485
1486 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1483.738 kb on + strand at 1483.738 kb on + strand at 1483.738 kb on + strand at 1483.739 kb on - strand at 1483.739 kb on - strand at 1483.739 kb on - strand at 1483.742 kb on - strand at 1483.874 kb on + strand, within RALBFv3_RS21220 at 1484.144 kb on - strand, within RALBFv3_RS21220 at 1484.144 kb on - strand, within RALBFv3_RS21220 at 1484.144 kb on - strand, within RALBFv3_RS21220 at 1484.158 kb on + strand, within RALBFv3_RS21220 at 1484.236 kb on + strand, within RALBFv3_RS21220 at 1484.236 kb on + strand, within RALBFv3_RS21220 at 1484.236 kb on + strand, within RALBFv3_RS21220 at 1484.236 kb on + strand, within RALBFv3_RS21220 at 1484.237 kb on - strand, within RALBFv3_RS21220 at 1484.260 kb on + strand, within RALBFv3_RS21220 at 1484.260 kb on + strand, within RALBFv3_RS21220 at 1484.314 kb on + strand, within RALBFv3_RS21220 at 1484.327 kb on - strand, within RALBFv3_RS21220 at 1485.262 kb on - strand, within RALBFv3_RS21225 at 1485.384 kb on + strand, within RALBFv3_RS21225 at 1485.384 kb on + strand, within RALBFv3_RS21225 at 1485.385 kb on - strand, within RALBFv3_RS21225 at 1485.385 kb on - strand, within RALBFv3_RS21225 at 1485.918 kb on - strand, within RALBFv3_RS21230 at 1486.087 kb on + strand at 1486.087 kb on + strand at 1486.088 kb on - strand at 1486.089 kb on + strand at 1486.090 kb on - strand at 1486.090 kb on - strand at 1486.143 kb on - strand at 1486.143 kb on - strand at 1486.202 kb on + strand, within RALBFv3_RS21235 at 1486.202 kb on + strand, within RALBFv3_RS21235 at 1486.203 kb on - strand, within RALBFv3_RS21235 at 1486.462 kb on + strand, within RALBFv3_RS21235 at 1486.462 kb on + strand, within RALBFv3_RS21235 at 1486.463 kb on - strand, within RALBFv3_RS21235 at 1486.464 kb on - strand, within RALBFv3_RS21235
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,483,738 + +1.1 1,483,738 + +0.1 1,483,738 + +1.0 1,483,739 - +0.4 1,483,739 - -1.6 1,483,739 - -1.6 1,483,742 - -2.7 1,483,874 + RALBFv3_RS21220 0.19 -0.1 1,484,144 - RALBFv3_RS21220 0.56 -0.1 1,484,144 - RALBFv3_RS21220 0.56 -0.1 1,484,144 - RALBFv3_RS21220 0.56 -2.0 1,484,158 + RALBFv3_RS21220 0.58 -0.3 1,484,236 + RALBFv3_RS21220 0.68 +0.1 1,484,236 + RALBFv3_RS21220 0.68 -1.3 1,484,236 + RALBFv3_RS21220 0.68 -1.3 1,484,236 + RALBFv3_RS21220 0.68 -0.9 1,484,237 - RALBFv3_RS21220 0.69 -1.1 1,484,260 + RALBFv3_RS21220 0.72 -0.1 1,484,260 + RALBFv3_RS21220 0.72 -0.1 1,484,314 + RALBFv3_RS21220 0.79 -0.3 1,484,327 - RALBFv3_RS21220 0.81 -0.7 1,485,262 - RALBFv3_RS21225 0.59 +0.7 1,485,384 + RALBFv3_RS21225 0.72 +3.5 1,485,384 + RALBFv3_RS21225 0.72 +0.8 1,485,385 - RALBFv3_RS21225 0.72 +0.9 1,485,385 - RALBFv3_RS21225 0.72 -1.3 1,485,918 - RALBFv3_RS21230 0.75 -1.4 1,486,087 + +0.3 1,486,087 + +0.3 1,486,088 - -0.4 1,486,089 + -0.5 1,486,090 - -1.1 1,486,090 - +0.3 1,486,143 - +1.4 1,486,143 - +0.4 1,486,202 + RALBFv3_RS21235 0.17 -0.1 1,486,202 + RALBFv3_RS21235 0.17 -0.6 1,486,203 - RALBFv3_RS21235 0.17 -0.6 1,486,462 + RALBFv3_RS21235 0.77 -1.6 1,486,462 + RALBFv3_RS21235 0.77 +0.0 1,486,463 - RALBFv3_RS21235 0.77 +0.1 1,486,464 - RALBFv3_RS21235 0.77 -0.9
Or see this region's nucleotide sequence