Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18975 and RALBFv3_RS18980 are separated by 322 nucleotides RALBFv3_RS18980 and RALBFv3_RS18985 are separated by 159 nucleotides
RALBFv3_RS18975: RALBFv3_RS18975 - methyl-accepting chemotaxis protein, at 808,033 to 809,607
_RS18975
RALBFv3_RS18980: RALBFv3_RS18980 - hypothetical protein, at 809,930 to 811,030
_RS18980
RALBFv3_RS18985: RALBFv3_RS18985 - salicylate synthase, at 811,190 to 814,213
_RS18985
Position (kb) 809
810
811
812 Strain fitness (log2 ratio) -2
-1
0
1 at 809.044 kb on - strand, within RALBFv3_RS18975 at 809.605 kb on + strand at 809.929 kb on + strand at 809.929 kb on + strand at 809.930 kb on - strand at 810.698 kb on + strand, within RALBFv3_RS18980 at 810.912 kb on - strand, within RALBFv3_RS18980 at 810.912 kb on - strand, within RALBFv3_RS18980 at 810.912 kb on - strand, within RALBFv3_RS18980 at 810.977 kb on + strand at 811.004 kb on - strand at 811.008 kb on - strand at 811.047 kb on + strand at 811.607 kb on - strand, within RALBFv3_RS18985 at 811.885 kb on - strand, within RALBFv3_RS18985 at 811.885 kb on - strand, within RALBFv3_RS18985 at 811.947 kb on + strand, within RALBFv3_RS18985 at 811.947 kb on + strand, within RALBFv3_RS18985 at 811.948 kb on - strand, within RALBFv3_RS18985 at 811.995 kb on + strand, within RALBFv3_RS18985
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 809,044 - RALBFv3_RS18975 0.64 -2.2 809,605 + -2.7 809,929 + -0.5 809,929 + +1.1 809,930 - -0.2 810,698 + RALBFv3_RS18980 0.70 -1.0 810,912 - RALBFv3_RS18980 0.89 -0.7 810,912 - RALBFv3_RS18980 0.89 -0.0 810,912 - RALBFv3_RS18980 0.89 +0.2 810,977 + -0.4 811,004 - -0.0 811,008 - -0.3 811,047 + -1.0 811,607 - RALBFv3_RS18985 0.14 +0.5 811,885 - RALBFv3_RS18985 0.23 +1.5 811,885 - RALBFv3_RS18985 0.23 -1.5 811,947 + RALBFv3_RS18985 0.25 +1.1 811,947 + RALBFv3_RS18985 0.25 +0.8 811,948 - RALBFv3_RS18985 0.25 -1.1 811,995 + RALBFv3_RS18985 0.27 -0.7
Or see this region's nucleotide sequence