Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17760 and RALBFv3_RS17765 are separated by 979 nucleotides RALBFv3_RS17765 and RALBFv3_RS17770 are separated by 138 nucleotides
RALBFv3_RS17760: RALBFv3_RS17760 - hypothetical protein, at 488,131 to 489,177
_RS17760
RALBFv3_RS17765: RALBFv3_RS17765 - azoreductase, at 490,157 to 490,783
_RS17765
RALBFv3_RS17770: RALBFv3_RS17770 - LysR family transcriptional regulator, at 490,922 to 491,872
_RS17770
Position (kb) 490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 489.307 kb on + strand at 489.319 kb on + strand at 489.319 kb on + strand at 489.319 kb on + strand at 489.320 kb on - strand at 489.320 kb on - strand at 489.320 kb on - strand at 489.322 kb on + strand at 489.322 kb on + strand at 489.323 kb on - strand at 489.323 kb on - strand at 489.323 kb on - strand at 489.335 kb on - strand at 489.335 kb on - strand at 489.337 kb on + strand at 489.337 kb on + strand at 489.337 kb on + strand at 489.338 kb on - strand at 489.338 kb on - strand at 489.340 kb on + strand at 489.340 kb on + strand at 489.340 kb on + strand at 489.476 kb on - strand at 489.502 kb on - strand at 489.502 kb on - strand at 489.510 kb on + strand at 489.596 kb on + strand at 489.733 kb on - strand at 489.768 kb on + strand at 489.814 kb on + strand at 489.815 kb on - strand at 489.815 kb on - strand at 489.936 kb on + strand at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.351 kb on - strand, within RALBFv3_RS17765 at 490.351 kb on - strand, within RALBFv3_RS17765 at 490.422 kb on + strand, within RALBFv3_RS17765 at 490.422 kb on + strand, within RALBFv3_RS17765 at 490.494 kb on + strand, within RALBFv3_RS17765 at 490.494 kb on + strand, within RALBFv3_RS17765 at 490.494 kb on + strand, within RALBFv3_RS17765 at 490.494 kb on + strand, within RALBFv3_RS17765 at 490.495 kb on - strand, within RALBFv3_RS17765 at 490.820 kb on + strand at 490.821 kb on - strand at 490.821 kb on - strand at 490.821 kb on - strand at 490.821 kb on - strand at 490.895 kb on + strand at 491.118 kb on - strand, within RALBFv3_RS17770 at 491.118 kb on - strand, within RALBFv3_RS17770 at 491.338 kb on - strand, within RALBFv3_RS17770 at 491.570 kb on + strand, within RALBFv3_RS17770 at 491.570 kb on + strand, within RALBFv3_RS17770
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 489,307 + -1.7 489,319 + +0.1 489,319 + +0.3 489,319 + -0.6 489,320 - +0.1 489,320 - -1.4 489,320 - +1.8 489,322 + +0.6 489,322 + -0.7 489,323 - +0.3 489,323 - +0.6 489,323 - +0.0 489,335 - -0.6 489,335 - -0.4 489,337 + +0.2 489,337 + -0.4 489,337 + +0.0 489,338 - -0.4 489,338 - -0.0 489,340 + +0.9 489,340 + +1.6 489,340 + -0.0 489,476 - +0.6 489,502 - +0.6 489,502 - +0.6 489,510 + -0.5 489,596 + -0.6 489,733 - -1.7 489,768 + +1.1 489,814 + -0.4 489,815 - +0.1 489,815 - +0.1 489,936 + -0.7 490,350 + RALBFv3_RS17765 0.31 +0.8 490,350 + RALBFv3_RS17765 0.31 -0.3 490,350 + RALBFv3_RS17765 0.31 +0.4 490,350 + RALBFv3_RS17765 0.31 -0.8 490,350 + RALBFv3_RS17765 0.31 +1.6 490,350 + RALBFv3_RS17765 0.31 +0.6 490,350 + RALBFv3_RS17765 0.31 -0.4 490,351 - RALBFv3_RS17765 0.31 -2.1 490,351 - RALBFv3_RS17765 0.31 -0.7 490,422 + RALBFv3_RS17765 0.42 +0.1 490,422 + RALBFv3_RS17765 0.42 +1.1 490,494 + RALBFv3_RS17765 0.54 +0.7 490,494 + RALBFv3_RS17765 0.54 +0.0 490,494 + RALBFv3_RS17765 0.54 +1.4 490,494 + RALBFv3_RS17765 0.54 +0.4 490,495 - RALBFv3_RS17765 0.54 -0.9 490,820 + +1.9 490,821 - -1.2 490,821 - -0.3 490,821 - +0.1 490,821 - -2.1 490,895 + +1.6 491,118 - RALBFv3_RS17770 0.21 -2.3 491,118 - RALBFv3_RS17770 0.21 +0.9 491,338 - RALBFv3_RS17770 0.44 +0.5 491,570 + RALBFv3_RS17770 0.68 +1.1 491,570 + RALBFv3_RS17770 0.68 +1.6
Or see this region's nucleotide sequence