Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17755 and RALBFv3_RS24290 are separated by 290 nucleotides RALBFv3_RS24290 and RALBFv3_RS17760 are separated by 363 nucleotides RALBFv3_RS17760 and RALBFv3_RS17765 are separated by 979 nucleotides
RALBFv3_RS17755: RALBFv3_RS17755 - DUF1488 domain-containing protein, at 486,929 to 487,270
_RS17755
RALBFv3_RS24290: RALBFv3_RS24290 - hypothetical protein, at 487,561 to 487,767
_RS24290
RALBFv3_RS17760: RALBFv3_RS17760 - hypothetical protein, at 488,131 to 489,177
_RS17760
RALBFv3_RS17765: RALBFv3_RS17765 - azoreductase, at 490,157 to 490,783
_RS17765
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1
2 at 487.265 kb on - strand at 487.265 kb on - strand at 487.457 kb on + strand at 487.491 kb on + strand at 487.492 kb on - strand at 487.548 kb on + strand at 487.548 kb on + strand at 487.548 kb on + strand at 487.548 kb on + strand at 487.548 kb on + strand at 487.549 kb on - strand at 487.549 kb on - strand at 487.550 kb on + strand at 487.550 kb on + strand at 487.556 kb on + strand at 487.760 kb on + strand at 487.760 kb on + strand at 487.898 kb on + strand at 487.899 kb on - strand at 487.899 kb on - strand at 487.899 kb on - strand at 487.930 kb on + strand at 488.042 kb on + strand at 488.043 kb on - strand at 488.074 kb on - strand at 488.308 kb on + strand, within RALBFv3_RS17760 at 488.308 kb on + strand, within RALBFv3_RS17760 at 488.309 kb on - strand, within RALBFv3_RS17760 at 488.309 kb on - strand, within RALBFv3_RS17760 at 488.312 kb on - strand at 488.312 kb on - strand, within RALBFv3_RS17760 at 488.425 kb on + strand, within RALBFv3_RS17760 at 488.425 kb on + strand, within RALBFv3_RS17760 at 488.425 kb on + strand, within RALBFv3_RS17760 at 488.425 kb on + strand, within RALBFv3_RS17760 at 488.426 kb on - strand, within RALBFv3_RS17760 at 488.426 kb on - strand, within RALBFv3_RS17760 at 488.426 kb on - strand, within RALBFv3_RS17760 at 488.426 kb on - strand, within RALBFv3_RS17760 at 488.426 kb on - strand, within RALBFv3_RS17760 at 488.567 kb on + strand, within RALBFv3_RS17760 at 488.568 kb on + strand, within RALBFv3_RS17760 at 488.569 kb on - strand, within RALBFv3_RS17760 at 488.569 kb on - strand, within RALBFv3_RS17760 at 488.602 kb on + strand, within RALBFv3_RS17760 at 488.602 kb on + strand, within RALBFv3_RS17760 at 488.603 kb on - strand, within RALBFv3_RS17760 at 488.603 kb on - strand, within RALBFv3_RS17760 at 488.604 kb on + strand, within RALBFv3_RS17760 at 488.743 kb on + strand, within RALBFv3_RS17760 at 488.743 kb on + strand, within RALBFv3_RS17760 at 488.791 kb on + strand, within RALBFv3_RS17760 at 488.792 kb on - strand, within RALBFv3_RS17760 at 488.923 kb on + strand, within RALBFv3_RS17760 at 488.935 kb on + strand, within RALBFv3_RS17760 at 488.935 kb on + strand, within RALBFv3_RS17760 at 488.936 kb on - strand, within RALBFv3_RS17760 at 488.998 kb on + strand, within RALBFv3_RS17760 at 489.028 kb on + strand, within RALBFv3_RS17760 at 489.029 kb on - strand, within RALBFv3_RS17760 at 489.067 kb on + strand, within RALBFv3_RS17760 at 489.307 kb on + strand at 489.319 kb on + strand at 489.319 kb on + strand at 489.319 kb on + strand at 489.320 kb on - strand at 489.320 kb on - strand at 489.320 kb on - strand at 489.322 kb on + strand at 489.322 kb on + strand at 489.323 kb on - strand at 489.323 kb on - strand at 489.323 kb on - strand at 489.335 kb on - strand at 489.335 kb on - strand at 489.337 kb on + strand at 489.337 kb on + strand at 489.337 kb on + strand at 489.338 kb on - strand at 489.338 kb on - strand at 489.340 kb on + strand at 489.340 kb on + strand at 489.340 kb on + strand at 489.476 kb on - strand at 489.502 kb on - strand at 489.502 kb on - strand at 489.510 kb on + strand at 489.596 kb on + strand at 489.733 kb on - strand at 489.768 kb on + strand at 489.814 kb on + strand at 489.815 kb on - strand at 489.815 kb on - strand at 489.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 487,265 - -1.0 487,265 - -0.4 487,457 + -0.7 487,491 + -1.4 487,492 - +1.4 487,548 + +0.1 487,548 + +0.2 487,548 + +0.5 487,548 + -2.2 487,548 + -1.7 487,549 - -1.4 487,549 - -2.1 487,550 + -1.4 487,550 + +1.0 487,556 + +0.8 487,760 + +0.5 487,760 + -0.9 487,898 + -0.5 487,899 - -0.3 487,899 - -0.4 487,899 - +0.2 487,930 + -1.3 488,042 + -0.9 488,043 - -0.3 488,074 - +1.6 488,308 + RALBFv3_RS17760 0.17 -0.3 488,308 + RALBFv3_RS17760 0.17 +0.3 488,309 - RALBFv3_RS17760 0.17 -0.6 488,309 - RALBFv3_RS17760 0.17 +0.1 488,312 - +1.6 488,312 - RALBFv3_RS17760 0.17 -0.7 488,425 + RALBFv3_RS17760 0.28 -0.5 488,425 + RALBFv3_RS17760 0.28 +2.5 488,425 + RALBFv3_RS17760 0.28 -0.6 488,425 + RALBFv3_RS17760 0.28 +1.6 488,426 - RALBFv3_RS17760 0.28 -0.7 488,426 - RALBFv3_RS17760 0.28 +0.6 488,426 - RALBFv3_RS17760 0.28 +1.2 488,426 - RALBFv3_RS17760 0.28 -0.7 488,426 - RALBFv3_RS17760 0.28 +0.3 488,567 + RALBFv3_RS17760 0.42 -0.8 488,568 + RALBFv3_RS17760 0.42 +1.7 488,569 - RALBFv3_RS17760 0.42 -0.7 488,569 - RALBFv3_RS17760 0.42 -1.2 488,602 + RALBFv3_RS17760 0.45 -0.0 488,602 + RALBFv3_RS17760 0.45 +1.6 488,603 - RALBFv3_RS17760 0.45 -0.4 488,603 - RALBFv3_RS17760 0.45 +2.6 488,604 + RALBFv3_RS17760 0.45 -0.3 488,743 + RALBFv3_RS17760 0.58 -0.7 488,743 + RALBFv3_RS17760 0.58 +1.0 488,791 + RALBFv3_RS17760 0.63 -0.4 488,792 - RALBFv3_RS17760 0.63 -0.0 488,923 + RALBFv3_RS17760 0.76 -0.4 488,935 + RALBFv3_RS17760 0.77 +1.3 488,935 + RALBFv3_RS17760 0.77 -0.1 488,936 - RALBFv3_RS17760 0.77 +2.0 488,998 + RALBFv3_RS17760 0.83 +0.2 489,028 + RALBFv3_RS17760 0.86 -0.9 489,029 - RALBFv3_RS17760 0.86 -2.2 489,067 + RALBFv3_RS17760 0.89 -0.6 489,307 + -1.7 489,319 + +0.1 489,319 + +0.3 489,319 + -0.6 489,320 - +0.1 489,320 - -1.4 489,320 - +1.8 489,322 + +0.6 489,322 + -0.7 489,323 - +0.3 489,323 - +0.6 489,323 - +0.0 489,335 - -0.6 489,335 - -0.4 489,337 + +0.2 489,337 + -0.4 489,337 + +0.0 489,338 - -0.4 489,338 - -0.0 489,340 + +0.9 489,340 + +1.6 489,340 + -0.0 489,476 - +0.6 489,502 - +0.6 489,502 - +0.6 489,510 + -0.5 489,596 + -0.6 489,733 - -1.7 489,768 + +1.1 489,814 + -0.4 489,815 - +0.1 489,815 - +0.1 489,936 + -0.7
Or see this region's nucleotide sequence