Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16355

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS16345 and RALBFv3_RS16350 are separated by 8 nucleotidesRALBFv3_RS16350 and RALBFv3_RS16355 overlap by 4 nucleotidesRALBFv3_RS16355 and RALBFv3_RS16360 overlap by 4 nucleotides RALBFv3_RS16345: RALBFv3_RS16345 - cytochrome c oxidase subunit IV, at 124,729 to 125,070 _RS16345 RALBFv3_RS16350: RALBFv3_RS16350 - bb3-type cytochrome oxidase subunit IV, at 125,079 to 125,786 _RS16350 RALBFv3_RS16355: RALBFv3_RS16355 - cytochrome oxidase subunit III, at 125,783 to 126,394 _RS16355 RALBFv3_RS16360: RALBFv3_RS16360 - cytochrome c oxidase subunit I, at 126,391 to 128,151 _RS16360 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.830 kb on - strand, within RALBFv3_RS16345at 124.830 kb on - strand, within RALBFv3_RS16345at 124.946 kb on + strand, within RALBFv3_RS16345at 124.946 kb on + strand, within RALBFv3_RS16345at 124.946 kb on + strand, within RALBFv3_RS16345at 124.947 kb on - strand, within RALBFv3_RS16345at 124.947 kb on - strand, within RALBFv3_RS16345at 124.957 kb on + strand, within RALBFv3_RS16345at 124.958 kb on + strand, within RALBFv3_RS16345at 124.958 kb on + strand, within RALBFv3_RS16345at 124.959 kb on - strand, within RALBFv3_RS16345at 124.959 kb on - strand, within RALBFv3_RS16345at 125.003 kb on + strand, within RALBFv3_RS16345at 125.003 kb on + strand, within RALBFv3_RS16345at 125.004 kb on - strand, within RALBFv3_RS16345at 125.004 kb on - strand, within RALBFv3_RS16345at 125.089 kb on + strandat 125.089 kb on + strandat 125.089 kb on + strandat 125.090 kb on - strandat 125.137 kb on + strandat 125.138 kb on - strandat 125.138 kb on - strandat 125.138 kb on - strandat 125.138 kb on - strandat 125.138 kb on - strandat 125.138 kb on - strandat 125.221 kb on + strand, within RALBFv3_RS16350at 125.221 kb on + strand, within RALBFv3_RS16350at 125.222 kb on - strand, within RALBFv3_RS16350at 125.222 kb on - strand, within RALBFv3_RS16350at 125.222 kb on - strand, within RALBFv3_RS16350at 125.222 kb on - strand, within RALBFv3_RS16350at 125.222 kb on - strand, within RALBFv3_RS16350at 125.568 kb on + strand, within RALBFv3_RS16350at 125.596 kb on + strand, within RALBFv3_RS16350at 125.597 kb on - strand, within RALBFv3_RS16350at 125.799 kb on + strandat 125.799 kb on + strandat 125.799 kb on + strandat 125.800 kb on - strandat 125.800 kb on - strandat 125.892 kb on + strand, within RALBFv3_RS16355at 125.892 kb on + strand, within RALBFv3_RS16355at 125.892 kb on + strand, within RALBFv3_RS16355at 125.988 kb on - strand, within RALBFv3_RS16355at 125.988 kb on - strand, within RALBFv3_RS16355at 126.019 kb on - strand, within RALBFv3_RS16355at 126.019 kb on - strand, within RALBFv3_RS16355at 126.019 kb on - strand, within RALBFv3_RS16355at 126.270 kb on + strand, within RALBFv3_RS16355at 126.270 kb on + strand, within RALBFv3_RS16355at 126.271 kb on - strand, within RALBFv3_RS16355at 126.271 kb on - strand, within RALBFv3_RS16355at 126.271 kb on - strand, within RALBFv3_RS16355at 126.497 kb on + strandat 126.497 kb on + strandat 126.498 kb on - strandat 126.498 kb on - strandat 126.503 kb on + strandat 126.515 kb on + strandat 126.515 kb on + strandat 126.516 kb on - strandat 126.737 kb on + strand, within RALBFv3_RS16360at 126.737 kb on + strand, within RALBFv3_RS16360at 126.738 kb on - strand, within RALBFv3_RS16360at 126.738 kb on - strand, within RALBFv3_RS16360at 126.746 kb on + strand, within RALBFv3_RS16360at 126.747 kb on - strand, within RALBFv3_RS16360at 126.752 kb on + strand, within RALBFv3_RS16360at 126.752 kb on + strand, within RALBFv3_RS16360at 126.752 kb on + strand, within RALBFv3_RS16360at 126.753 kb on - strand, within RALBFv3_RS16360at 126.753 kb on - strand, within RALBFv3_RS16360at 126.753 kb on - strand, within RALBFv3_RS16360at 126.753 kb on - strand, within RALBFv3_RS16360at 126.785 kb on + strand, within RALBFv3_RS16360at 126.785 kb on + strand, within RALBFv3_RS16360at 126.786 kb on - strand, within RALBFv3_RS16360at 126.786 kb on - strand, within RALBFv3_RS16360at 126.800 kb on + strand, within RALBFv3_RS16360at 126.809 kb on + strand, within RALBFv3_RS16360at 126.810 kb on - strand, within RALBFv3_RS16360at 126.893 kb on + strand, within RALBFv3_RS16360at 126.893 kb on + strand, within RALBFv3_RS16360at 126.894 kb on - strand, within RALBFv3_RS16360at 126.894 kb on - strand, within RALBFv3_RS16360at 126.894 kb on - strand, within RALBFv3_RS16360at 126.962 kb on + strand, within RALBFv3_RS16360at 126.963 kb on - strand, within RALBFv3_RS16360at 126.981 kb on + strand, within RALBFv3_RS16360at 126.982 kb on - strand, within RALBFv3_RS16360at 127.112 kb on + strand, within RALBFv3_RS16360at 127.112 kb on + strand, within RALBFv3_RS16360at 127.112 kb on + strand, within RALBFv3_RS16360at 127.112 kb on + strand, within RALBFv3_RS16360at 127.113 kb on - strand, within RALBFv3_RS16360at 127.176 kb on - strand, within RALBFv3_RS16360at 127.340 kb on + strand, within RALBFv3_RS16360at 127.340 kb on + strand, within RALBFv3_RS16360at 127.340 kb on + strand, within RALBFv3_RS16360at 127.340 kb on + strand, within RALBFv3_RS16360at 127.341 kb on - strand, within RALBFv3_RS16360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
remove
124,829 + RALBFv3_RS16345 0.29 -0.4
124,829 + RALBFv3_RS16345 0.29 -1.0
124,829 + RALBFv3_RS16345 0.29 +0.8
124,829 + RALBFv3_RS16345 0.29 -0.9
124,829 + RALBFv3_RS16345 0.29 +1.7
124,829 + RALBFv3_RS16345 0.29 -0.1
124,830 - RALBFv3_RS16345 0.30 -1.9
124,830 - RALBFv3_RS16345 0.30 -0.2
124,946 + RALBFv3_RS16345 0.63 +0.9
124,946 + RALBFv3_RS16345 0.63 +0.1
124,946 + RALBFv3_RS16345 0.63 -2.8
124,947 - RALBFv3_RS16345 0.64 -0.6
124,947 - RALBFv3_RS16345 0.64 -0.7
124,957 + RALBFv3_RS16345 0.67 +0.5
124,958 + RALBFv3_RS16345 0.67 -0.6
124,958 + RALBFv3_RS16345 0.67 +1.7
124,959 - RALBFv3_RS16345 0.67 -1.8
124,959 - RALBFv3_RS16345 0.67 -0.4
125,003 + RALBFv3_RS16345 0.80 +0.5
125,003 + RALBFv3_RS16345 0.80 -1.0
125,004 - RALBFv3_RS16345 0.80 -0.2
125,004 - RALBFv3_RS16345 0.80 -0.3
125,089 + +0.7
125,089 + -0.3
125,089 + -0.1
125,090 - +0.1
125,137 + +1.1
125,138 - -3.4
125,138 - +0.5
125,138 - -0.9
125,138 - +1.2
125,138 - +1.2
125,138 - -2.1
125,221 + RALBFv3_RS16350 0.20 +0.4
125,221 + RALBFv3_RS16350 0.20 -1.2
125,222 - RALBFv3_RS16350 0.20 -0.6
125,222 - RALBFv3_RS16350 0.20 -0.6
125,222 - RALBFv3_RS16350 0.20 +2.3
125,222 - RALBFv3_RS16350 0.20 +1.7
125,222 - RALBFv3_RS16350 0.20 +1.7
125,568 + RALBFv3_RS16350 0.69 -0.6
125,596 + RALBFv3_RS16350 0.73 -1.2
125,597 - RALBFv3_RS16350 0.73 -0.3
125,799 + +1.0
125,799 + +0.5
125,799 + -1.5
125,800 - -0.7
125,800 - +0.7
125,892 + RALBFv3_RS16355 0.18 -0.9
125,892 + RALBFv3_RS16355 0.18 +0.1
125,892 + RALBFv3_RS16355 0.18 +0.1
125,988 - RALBFv3_RS16355 0.33 -0.0
125,988 - RALBFv3_RS16355 0.33 +0.1
126,019 - RALBFv3_RS16355 0.39 -0.9
126,019 - RALBFv3_RS16355 0.39 +0.0
126,019 - RALBFv3_RS16355 0.39 -1.6
126,270 + RALBFv3_RS16355 0.80 +1.5
126,270 + RALBFv3_RS16355 0.80 -0.6
126,271 - RALBFv3_RS16355 0.80 +2.1
126,271 - RALBFv3_RS16355 0.80 +2.4
126,271 - RALBFv3_RS16355 0.80 +0.3
126,497 + -0.8
126,497 + -0.4
126,498 - -0.1
126,498 - +0.7
126,503 + -1.1
126,515 + -0.7
126,515 + -0.3
126,516 - +2.0
126,737 + RALBFv3_RS16360 0.20 -1.2
126,737 + RALBFv3_RS16360 0.20 -1.5
126,738 - RALBFv3_RS16360 0.20 -0.3
126,738 - RALBFv3_RS16360 0.20 -0.8
126,746 + RALBFv3_RS16360 0.20 +2.3
126,747 - RALBFv3_RS16360 0.20 +0.3
126,752 + RALBFv3_RS16360 0.20 -1.6
126,752 + RALBFv3_RS16360 0.20 +0.0
126,752 + RALBFv3_RS16360 0.20 +0.4
126,753 - RALBFv3_RS16360 0.21 -0.4
126,753 - RALBFv3_RS16360 0.21 -2.2
126,753 - RALBFv3_RS16360 0.21 -0.9
126,753 - RALBFv3_RS16360 0.21 +0.8
126,785 + RALBFv3_RS16360 0.22 +0.9
126,785 + RALBFv3_RS16360 0.22 +0.1
126,786 - RALBFv3_RS16360 0.22 -1.0
126,786 - RALBFv3_RS16360 0.22 +0.6
126,800 + RALBFv3_RS16360 0.23 -0.1
126,809 + RALBFv3_RS16360 0.24 +2.3
126,810 - RALBFv3_RS16360 0.24 +0.6
126,893 + RALBFv3_RS16360 0.29 +1.1
126,893 + RALBFv3_RS16360 0.29 +1.0
126,894 - RALBFv3_RS16360 0.29 +1.7
126,894 - RALBFv3_RS16360 0.29 -0.1
126,894 - RALBFv3_RS16360 0.29 -1.3
126,962 + RALBFv3_RS16360 0.32 +0.7
126,963 - RALBFv3_RS16360 0.32 -1.1
126,981 + RALBFv3_RS16360 0.34 -0.1
126,982 - RALBFv3_RS16360 0.34 -0.9
127,112 + RALBFv3_RS16360 0.41 -0.3
127,112 + RALBFv3_RS16360 0.41 +0.9
127,112 + RALBFv3_RS16360 0.41 -0.3
127,112 + RALBFv3_RS16360 0.41 -0.5
127,113 - RALBFv3_RS16360 0.41 +0.0
127,176 - RALBFv3_RS16360 0.45 +2.6
127,340 + RALBFv3_RS16360 0.54 -1.3
127,340 + RALBFv3_RS16360 0.54 +0.4
127,340 + RALBFv3_RS16360 0.54 -0.9
127,340 + RALBFv3_RS16360 0.54 +0.7
127,341 - RALBFv3_RS16360 0.54 -1.4

Or see this region's nucleotide sequence