Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS09925

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS09920 and RALBFv3_RS09925 overlap by 4 nucleotidesRALBFv3_RS09925 and RALBFv3_RS09930 are separated by 9 nucleotidesRALBFv3_RS09930 and RALBFv3_RS09935 overlap by 4 nucleotides RALBFv3_RS09920: RALBFv3_RS09920 - thiamine phosphate synthase, at 2,209,124 to 2,210,290 _RS09920 RALBFv3_RS09925: RALBFv3_RS09925 - thiazole synthase, at 2,210,287 to 2,211,114 _RS09925 RALBFv3_RS09930: RALBFv3_RS09930 - sulfur carrier protein ThiS, at 2,211,124 to 2,211,339 _RS09930 RALBFv3_RS09935: RALBFv3_RS09935 - FAD-dependent oxidoreductase, at 2,211,336 to 2,212,475 _RS09935 Position (kb) 2210 2211 2212Strain fitness (log2 ratio) -1 0 1at 2210.272 kb on - strandat 2211.120 kb on - strandat 2211.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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2,210,272 - +0.1
2,211,120 - -0.2
2,211,120 - +0.5

Or see this region's nucleotide sequence