Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05815 and RALBFv3_RS05820 are separated by 15 nucleotides RALBFv3_RS05820 and RALBFv3_RS05825 are separated by 66 nucleotides
RALBFv3_RS05815: RALBFv3_RS05815 - class I SAM-dependent RNA methyltransferase, at 1,294,570 to 1,295,970
_RS05815
RALBFv3_RS05820: RALBFv3_RS05820 - membrane protein, at 1,295,986 to 1,296,408
_RS05820
RALBFv3_RS05825: RALBFv3_RS05825 - glutamate-5-semialdehyde dehydrogenase, at 1,296,475 to 1,297,755
_RS05825
Position (kb) 1295
1296
1297 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1294.995 kb on + strand, within RALBFv3_RS05815 at 1294.996 kb on - strand, within RALBFv3_RS05815 at 1294.996 kb on - strand, within RALBFv3_RS05815 at 1295.149 kb on - strand, within RALBFv3_RS05815 at 1295.486 kb on + strand, within RALBFv3_RS05815 at 1295.487 kb on - strand, within RALBFv3_RS05815 at 1295.520 kb on - strand, within RALBFv3_RS05815 at 1295.520 kb on - strand, within RALBFv3_RS05815 at 1295.520 kb on - strand, within RALBFv3_RS05815 at 1295.520 kb on - strand, within RALBFv3_RS05815 at 1295.520 kb on - strand, within RALBFv3_RS05815 at 1295.688 kb on - strand, within RALBFv3_RS05815 at 1295.720 kb on + strand, within RALBFv3_RS05815 at 1295.721 kb on - strand, within RALBFv3_RS05815 at 1295.741 kb on + strand, within RALBFv3_RS05815 at 1295.804 kb on + strand, within RALBFv3_RS05815 at 1295.957 kb on + strand at 1296.509 kb on + strand at 1296.510 kb on - strand at 1296.596 kb on + strand at 1296.684 kb on - strand, within RALBFv3_RS05825 at 1296.684 kb on - strand, within RALBFv3_RS05825 at 1296.726 kb on + strand, within RALBFv3_RS05825 at 1296.902 kb on + strand, within RALBFv3_RS05825 at 1296.902 kb on + strand, within RALBFv3_RS05825 at 1297.049 kb on + strand, within RALBFv3_RS05825 at 1297.049 kb on + strand, within RALBFv3_RS05825 at 1297.049 kb on + strand, within RALBFv3_RS05825 at 1297.050 kb on - strand, within RALBFv3_RS05825 at 1297.050 kb on - strand, within RALBFv3_RS05825
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,294,995 + RALBFv3_RS05815 0.30 +0.1 1,294,996 - RALBFv3_RS05815 0.30 +2.0 1,294,996 - RALBFv3_RS05815 0.30 -1.7 1,295,149 - RALBFv3_RS05815 0.41 +3.1 1,295,486 + RALBFv3_RS05815 0.65 +0.7 1,295,487 - RALBFv3_RS05815 0.65 -0.3 1,295,520 - RALBFv3_RS05815 0.68 -0.6 1,295,520 - RALBFv3_RS05815 0.68 -1.0 1,295,520 - RALBFv3_RS05815 0.68 -0.2 1,295,520 - RALBFv3_RS05815 0.68 -2.4 1,295,520 - RALBFv3_RS05815 0.68 -0.5 1,295,688 - RALBFv3_RS05815 0.80 -0.6 1,295,720 + RALBFv3_RS05815 0.82 -0.1 1,295,721 - RALBFv3_RS05815 0.82 -0.4 1,295,741 + RALBFv3_RS05815 0.84 -0.8 1,295,804 + RALBFv3_RS05815 0.88 +0.1 1,295,957 + -1.4 1,296,509 + -0.5 1,296,510 - -1.0 1,296,596 + +0.4 1,296,684 - RALBFv3_RS05825 0.16 -1.4 1,296,684 - RALBFv3_RS05825 0.16 +2.0 1,296,726 + RALBFv3_RS05825 0.20 -0.2 1,296,902 + RALBFv3_RS05825 0.33 -0.3 1,296,902 + RALBFv3_RS05825 0.33 +0.0 1,297,049 + RALBFv3_RS05825 0.45 +2.4 1,297,049 + RALBFv3_RS05825 0.45 -1.9 1,297,049 + RALBFv3_RS05825 0.45 -0.5 1,297,050 - RALBFv3_RS05825 0.45 +2.0 1,297,050 - RALBFv3_RS05825 0.45 -1.0
Or see this region's nucleotide sequence