Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS05445

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS05440 and RALBFv3_RS05445 are separated by 179 nucleotidesRALBFv3_RS05445 and RALBFv3_RS05450 are separated by 5 nucleotidesRALBFv3_RS05450 and RALBFv3_RS05455 are separated by 27 nucleotides RALBFv3_RS05440: RALBFv3_RS05440 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 1,200,395 to 1,203,271 _RS05440 RALBFv3_RS05445: RALBFv3_RS05445 - TIGR02099 family protein, at 1,203,451 to 1,207,725 _RS05445 RALBFv3_RS05450: RALBFv3_RS05450 - carbon-nitrogen hydrolase family protein, at 1,207,731 to 1,208,600 _RS05450 RALBFv3_RS05455: RALBFv3_RS05455 - metalloprotease TldD, at 1,208,628 to 1,210,088 _RS05455 Position (kb) 1203 1204 1205 1206 1207 1208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 1202.511 kb on + strand, within RALBFv3_RS05440at 1202.511 kb on + strand, within RALBFv3_RS05440at 1202.512 kb on - strand, within RALBFv3_RS05440at 1202.512 kb on - strand, within RALBFv3_RS05440at 1202.544 kb on + strand, within RALBFv3_RS05440at 1202.544 kb on + strand, within RALBFv3_RS05440at 1202.544 kb on + strand, within RALBFv3_RS05440at 1202.625 kb on + strand, within RALBFv3_RS05440at 1202.626 kb on - strand, within RALBFv3_RS05440at 1202.626 kb on - strand, within RALBFv3_RS05440at 1202.685 kb on + strand, within RALBFv3_RS05440at 1202.686 kb on - strand, within RALBFv3_RS05440at 1202.686 kb on - strand, within RALBFv3_RS05440at 1202.686 kb on - strand, within RALBFv3_RS05440at 1202.686 kb on - strand, within RALBFv3_RS05440at 1203.165 kb on + strandat 1203.166 kb on - strandat 1203.166 kb on - strandat 1203.298 kb on + strandat 1203.805 kb on + strandat 1203.805 kb on + strandat 1203.810 kb on - strandat 1204.352 kb on - strand, within RALBFv3_RS05445at 1205.261 kb on - strand, within RALBFv3_RS05445at 1205.384 kb on - strand, within RALBFv3_RS05445at 1205.518 kb on + strand, within RALBFv3_RS05445at 1205.518 kb on + strand, within RALBFv3_RS05445at 1205.519 kb on - strand, within RALBFv3_RS05445at 1205.519 kb on - strand, within RALBFv3_RS05445at 1205.519 kb on - strand, within RALBFv3_RS05445at 1205.519 kb on - strand, within RALBFv3_RS05445at 1205.776 kb on + strand, within RALBFv3_RS05445at 1205.777 kb on - strand, within RALBFv3_RS05445at 1205.777 kb on - strand, within RALBFv3_RS05445at 1206.187 kb on + strand, within RALBFv3_RS05445at 1206.608 kb on - strand, within RALBFv3_RS05445at 1207.652 kb on - strandat 1207.917 kb on + strand, within RALBFv3_RS05450at 1207.917 kb on + strand, within RALBFv3_RS05450at 1207.917 kb on + strand, within RALBFv3_RS05450at 1207.917 kb on + strand, within RALBFv3_RS05450at 1208.085 kb on - strand, within RALBFv3_RS05450at 1208.127 kb on + strand, within RALBFv3_RS05450at 1208.173 kb on - strand, within RALBFv3_RS05450at 1208.256 kb on + strand, within RALBFv3_RS05450at 1208.257 kb on - strand, within RALBFv3_RS05450at 1208.340 kb on + strand, within RALBFv3_RS05450at 1208.341 kb on - strand, within RALBFv3_RS05450at 1208.403 kb on + strand, within RALBFv3_RS05450at 1208.403 kb on + strand, within RALBFv3_RS05450at 1208.403 kb on + strand, within RALBFv3_RS05450at 1208.404 kb on - strand, within RALBFv3_RS05450at 1208.404 kb on - strand, within RALBFv3_RS05450at 1208.404 kb on - strand, within RALBFv3_RS05450at 1208.404 kb on - strand, within RALBFv3_RS05450at 1208.404 kb on - strand, within RALBFv3_RS05450at 1208.404 kb on - strand, within RALBFv3_RS05450at 1208.404 kb on - strand, within RALBFv3_RS05450at 1208.598 kb on + strandat 1208.598 kb on + strandat 1208.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,202,511 + RALBFv3_RS05440 0.74 -1.0
1,202,511 + RALBFv3_RS05440 0.74 -2.1
1,202,512 - RALBFv3_RS05440 0.74 +0.7
1,202,512 - RALBFv3_RS05440 0.74 -0.4
1,202,544 + RALBFv3_RS05440 0.75 -1.0
1,202,544 + RALBFv3_RS05440 0.75 -1.0
1,202,544 + RALBFv3_RS05440 0.75 -0.4
1,202,625 + RALBFv3_RS05440 0.78 -1.0
1,202,626 - RALBFv3_RS05440 0.78 +0.1
1,202,626 - RALBFv3_RS05440 0.78 +1.3
1,202,685 + RALBFv3_RS05440 0.80 -0.6
1,202,686 - RALBFv3_RS05440 0.80 +2.4
1,202,686 - RALBFv3_RS05440 0.80 -0.3
1,202,686 - RALBFv3_RS05440 0.80 +0.7
1,202,686 - RALBFv3_RS05440 0.80 +1.8
1,203,165 + -1.0
1,203,166 - +0.0
1,203,166 - -0.8
1,203,298 + +1.4
1,203,805 + +1.0
1,203,805 + -0.6
1,203,810 - -0.2
1,204,352 - RALBFv3_RS05445 0.21 -1.7
1,205,261 - RALBFv3_RS05445 0.42 -0.4
1,205,384 - RALBFv3_RS05445 0.45 -1.1
1,205,518 + RALBFv3_RS05445 0.48 -1.4
1,205,518 + RALBFv3_RS05445 0.48 +0.2
1,205,519 - RALBFv3_RS05445 0.48 -2.0
1,205,519 - RALBFv3_RS05445 0.48 +0.1
1,205,519 - RALBFv3_RS05445 0.48 -0.9
1,205,519 - RALBFv3_RS05445 0.48 +1.4
1,205,776 + RALBFv3_RS05445 0.54 -0.0
1,205,777 - RALBFv3_RS05445 0.54 +0.4
1,205,777 - RALBFv3_RS05445 0.54 -1.5
1,206,187 + RALBFv3_RS05445 0.64 +0.5
1,206,608 - RALBFv3_RS05445 0.74 -2.9
1,207,652 - -0.0
1,207,917 + RALBFv3_RS05450 0.21 -0.3
1,207,917 + RALBFv3_RS05450 0.21 -0.7
1,207,917 + RALBFv3_RS05450 0.21 +0.3
1,207,917 + RALBFv3_RS05450 0.21 +3.0
1,208,085 - RALBFv3_RS05450 0.41 -0.5
1,208,127 + RALBFv3_RS05450 0.46 -0.9
1,208,173 - RALBFv3_RS05450 0.51 +4.0
1,208,256 + RALBFv3_RS05450 0.60 -0.8
1,208,257 - RALBFv3_RS05450 0.60 -0.7
1,208,340 + RALBFv3_RS05450 0.70 +1.0
1,208,341 - RALBFv3_RS05450 0.70 -0.2
1,208,403 + RALBFv3_RS05450 0.77 +2.0
1,208,403 + RALBFv3_RS05450 0.77 -0.5
1,208,403 + RALBFv3_RS05450 0.77 -0.4
1,208,404 - RALBFv3_RS05450 0.77 -0.6
1,208,404 - RALBFv3_RS05450 0.77 -0.6
1,208,404 - RALBFv3_RS05450 0.77 -1.4
1,208,404 - RALBFv3_RS05450 0.77 +1.0
1,208,404 - RALBFv3_RS05450 0.77 -0.4
1,208,404 - RALBFv3_RS05450 0.77 -0.4
1,208,404 - RALBFv3_RS05450 0.77 +0.4
1,208,598 + -0.6
1,208,598 + +8.1
1,208,599 - -0.5

Or see this region's nucleotide sequence