Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05300 and RALBFv3_RS05305 overlap by 1 nucleotides RALBFv3_RS05305 and RALBFv3_RS05310 are separated by 32 nucleotides RALBFv3_RS05310 and RALBFv3_RS05315 are separated by 56 nucleotides RALBFv3_RS05315 and RALBFv3_RS05320 are separated by 6 nucleotides
RALBFv3_RS05300: RALBFv3_RS05300 - polynucleotide adenylyltransferase PcnB, at 1,170,521 to 1,172,071
_RS05300
RALBFv3_RS05305: RALBFv3_RS05305 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,172,071 to 1,172,580
_RS05305
RALBFv3_RS05310: RALBFv3_RS05310 - deoxynucleoside kinase, at 1,172,613 to 1,173,257
_RS05310
RALBFv3_RS05315: RALBFv3_RS05315 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,173,314 to 1,174,135
_RS05315
RALBFv3_RS05320: RALBFv3_RS05320 - ABC transporter permease, at 1,174,142 to 1,174,849
_RS05320
Position (kb) 1172
1173
1174 Strain fitness (log2 ratio) -1
0
1 at 1172.083 kb on + strand at 1172.083 kb on + strand at 1172.083 kb on + strand at 1172.757 kb on + strand, within RALBFv3_RS05310 at 1172.758 kb on - strand, within RALBFv3_RS05310 at 1172.939 kb on - strand, within RALBFv3_RS05310 at 1173.075 kb on + strand, within RALBFv3_RS05310 at 1173.120 kb on + strand, within RALBFv3_RS05310 at 1173.121 kb on - strand, within RALBFv3_RS05310 at 1173.121 kb on - strand, within RALBFv3_RS05310 at 1173.121 kb on - strand, within RALBFv3_RS05310 at 1173.320 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,172,083 + +1.0 1,172,083 + -0.6 1,172,083 + -1.3 1,172,757 + RALBFv3_RS05310 0.22 +0.9 1,172,758 - RALBFv3_RS05310 0.22 -0.4 1,172,939 - RALBFv3_RS05310 0.51 +0.3 1,173,075 + RALBFv3_RS05310 0.72 +0.5 1,173,120 + RALBFv3_RS05310 0.79 +0.9 1,173,121 - RALBFv3_RS05310 0.79 -0.2 1,173,121 - RALBFv3_RS05310 0.79 -1.2 1,173,121 - RALBFv3_RS05310 0.79 -0.6 1,173,320 + +0.3
Or see this region's nucleotide sequence