Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04435 and RALBFv3_RS04440 are separated by 52 nucleotides RALBFv3_RS04440 and RALBFv3_RS04445 are separated by 72 nucleotides RALBFv3_RS04445 and RALBFv3_RS04450 are separated by 48 nucleotides RALBFv3_RS04450 and RALBFv3_RS04455 overlap by 4 nucleotides
RALBFv3_RS04435: RALBFv3_RS04435 - pantoate--beta-alanine ligase, at 998,179 to 999,030
_RS04435
RALBFv3_RS04440: RALBFv3_RS04440 - ParA family protein, at 999,083 to 999,742
_RS04440
RALBFv3_RS04445: RALBFv3_RS04445 - cobyric acid synthase, at 999,815 to 1,001,302
_RS04445
RALBFv3_RS04450: RALBFv3_RS04450 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 1,001,351 to 1,001,932
_RS04450
RALBFv3_RS04455: RALBFv3_RS04455 - cobalamin biosynthesis protein, at 1,001,929 to 1,002,924
_RS04455
Position (kb) 999
1000
1001
1002 Strain fitness (log2 ratio) -2
-1
0
1
2 at 999.225 kb on + strand, within RALBFv3_RS04440 at 999.226 kb on - strand, within RALBFv3_RS04440 at 999.338 kb on + strand, within RALBFv3_RS04440 at 999.725 kb on + strand at 999.726 kb on - strand at 999.728 kb on + strand at 999.809 kb on + strand at 999.999 kb on + strand, within RALBFv3_RS04445 at 1000.000 kb on - strand, within RALBFv3_RS04445 at 1000.599 kb on + strand, within RALBFv3_RS04445 at 1000.600 kb on - strand, within RALBFv3_RS04445 at 1000.900 kb on - strand, within RALBFv3_RS04445 at 1000.900 kb on - strand, within RALBFv3_RS04445 at 1000.900 kb on - strand, within RALBFv3_RS04445 at 1000.956 kb on + strand, within RALBFv3_RS04445 at 1000.957 kb on - strand, within RALBFv3_RS04445 at 1000.957 kb on - strand, within RALBFv3_RS04445 at 1000.965 kb on + strand, within RALBFv3_RS04445 at 1001.193 kb on + strand at 1001.447 kb on + strand, within RALBFv3_RS04450 at 1001.447 kb on + strand, within RALBFv3_RS04450 at 1001.807 kb on + strand, within RALBFv3_RS04450 at 1001.807 kb on + strand, within RALBFv3_RS04450 at 1001.808 kb on - strand, within RALBFv3_RS04450
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 999,225 + RALBFv3_RS04440 0.22 -0.1 999,226 - RALBFv3_RS04440 0.22 +0.9 999,338 + RALBFv3_RS04440 0.39 -0.0 999,725 + +0.1 999,726 - -0.6 999,728 + +0.6 999,809 + +1.7 999,999 + RALBFv3_RS04445 0.12 -0.2 1,000,000 - RALBFv3_RS04445 0.12 -0.5 1,000,599 + RALBFv3_RS04445 0.53 +1.7 1,000,600 - RALBFv3_RS04445 0.53 -0.1 1,000,900 - RALBFv3_RS04445 0.73 -0.6 1,000,900 - RALBFv3_RS04445 0.73 +0.9 1,000,900 - RALBFv3_RS04445 0.73 -1.1 1,000,956 + RALBFv3_RS04445 0.77 -0.2 1,000,957 - RALBFv3_RS04445 0.77 +0.1 1,000,957 - RALBFv3_RS04445 0.77 -2.7 1,000,965 + RALBFv3_RS04445 0.77 +1.9 1,001,193 + +0.6 1,001,447 + RALBFv3_RS04450 0.16 -0.7 1,001,447 + RALBFv3_RS04450 0.16 -0.9 1,001,807 + RALBFv3_RS04450 0.78 +0.5 1,001,807 + RALBFv3_RS04450 0.78 +0.6 1,001,808 - RALBFv3_RS04450 0.79 -1.1
Or see this region's nucleotide sequence