Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02675 and RALBFv3_RS02680 are separated by 215 nucleotides RALBFv3_RS02680 and RALBFv3_RS02685 are separated by 25 nucleotides RALBFv3_RS02685 and RALBFv3_RS02690 are separated by 60 nucleotides
RALBFv3_RS02675: RALBFv3_RS02675 - 2-methylcitrate synthase, at 594,958 to 596,115
_RS02675
RALBFv3_RS02680: RALBFv3_RS02680 - hypothetical protein, at 596,331 to 596,888
_RS02680
RALBFv3_RS02685: RALBFv3_RS02685 - bifunctional 2-methylcitrate dehydratase/aconitate hydratase, at 596,914 to 598,365
_RS02685
RALBFv3_RS02690: RALBFv3_RS02690 - aconitate hydratase AcnA, at 598,426 to 601,131
_RS02690
Position (kb) 596
597
598
599 Strain fitness (log2 ratio) -1
0
1
2
3 at 596.065 kb on + strand at 596.065 kb on + strand at 596.113 kb on + strand at 596.138 kb on + strand at 596.538 kb on + strand, within RALBFv3_RS02680 at 596.538 kb on + strand, within RALBFv3_RS02680 at 596.538 kb on + strand, within RALBFv3_RS02680 at 596.538 kb on + strand, within RALBFv3_RS02680 at 596.640 kb on + strand, within RALBFv3_RS02680 at 597.685 kb on + strand, within RALBFv3_RS02685 at 597.685 kb on + strand, within RALBFv3_RS02685 at 597.739 kb on + strand, within RALBFv3_RS02685 at 597.739 kb on + strand, within RALBFv3_RS02685 at 597.739 kb on + strand, within RALBFv3_RS02685 at 597.739 kb on + strand, within RALBFv3_RS02685 at 598.096 kb on + strand, within RALBFv3_RS02685 at 598.096 kb on + strand, within RALBFv3_RS02685 at 598.342 kb on + strand at 598.342 kb on + strand at 598.373 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 596,065 + -0.2 596,065 + +0.6 596,113 + -1.4 596,138 + -1.6 596,538 + RALBFv3_RS02680 0.37 +0.4 596,538 + RALBFv3_RS02680 0.37 +0.2 596,538 + RALBFv3_RS02680 0.37 -1.2 596,538 + RALBFv3_RS02680 0.37 +1.4 596,640 + RALBFv3_RS02680 0.55 -0.5 597,685 + RALBFv3_RS02685 0.53 +0.6 597,685 + RALBFv3_RS02685 0.53 +2.9 597,739 + RALBFv3_RS02685 0.57 +0.3 597,739 + RALBFv3_RS02685 0.57 +0.2 597,739 + RALBFv3_RS02685 0.57 +1.2 597,739 + RALBFv3_RS02685 0.57 -1.5 598,096 + RALBFv3_RS02685 0.81 -0.1 598,096 + RALBFv3_RS02685 0.81 -0.1 598,342 + -0.3 598,342 + +0.8 598,373 + -0.2
Or see this region's nucleotide sequence