Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02425 and RALBFv3_RS02430 are separated by 676 nucleotides RALBFv3_RS02430 and RALBFv3_RS02435 are separated by 864 nucleotides
RALBFv3_RS02425: RALBFv3_RS02425 - helix-turn-helix transcriptional regulator, at 541,321 to 542,079
_RS02425
RALBFv3_RS02430: RALBFv3_RS02430 - N-acetyltransferase, at 542,756 to 543,283
_RS02430
RALBFv3_RS02435: RALBFv3_RS02435 - tRNA-Ser, at 544,148 to 544,238
_RS02435
Position (kb) 542
543
544 Strain fitness (log2 ratio) -1
0
1
2 at 541.806 kb on - strand, within RALBFv3_RS02425 at 541.886 kb on + strand, within RALBFv3_RS02425 at 541.886 kb on + strand, within RALBFv3_RS02425 at 542.233 kb on + strand at 542.411 kb on + strand at 542.575 kb on + strand at 542.612 kb on + strand at 542.612 kb on + strand at 542.613 kb on - strand at 542.749 kb on + strand at 542.819 kb on + strand, within RALBFv3_RS02430 at 542.855 kb on + strand, within RALBFv3_RS02430 at 542.855 kb on + strand, within RALBFv3_RS02430 at 542.855 kb on + strand, within RALBFv3_RS02430 at 542.855 kb on + strand, within RALBFv3_RS02430 at 542.867 kb on + strand, within RALBFv3_RS02430 at 542.868 kb on - strand, within RALBFv3_RS02430 at 542.892 kb on + strand, within RALBFv3_RS02430 at 542.892 kb on + strand, within RALBFv3_RS02430 at 542.893 kb on - strand, within RALBFv3_RS02430 at 542.893 kb on - strand, within RALBFv3_RS02430 at 542.908 kb on - strand, within RALBFv3_RS02430 at 543.095 kb on + strand, within RALBFv3_RS02430 at 543.263 kb on + strand at 543.263 kb on + strand at 543.264 kb on - strand at 543.883 kb on + strand at 543.883 kb on + strand at 543.884 kb on - strand at 544.133 kb on + strand at 544.134 kb on - strand at 544.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 541,806 - RALBFv3_RS02425 0.64 -0.2 541,886 + RALBFv3_RS02425 0.74 -1.4 541,886 + RALBFv3_RS02425 0.74 +0.1 542,233 + -0.3 542,411 + +0.5 542,575 + +0.7 542,612 + -1.1 542,612 + +2.1 542,613 - -1.7 542,749 + -0.9 542,819 + RALBFv3_RS02430 0.12 +0.2 542,855 + RALBFv3_RS02430 0.19 -1.5 542,855 + RALBFv3_RS02430 0.19 +0.2 542,855 + RALBFv3_RS02430 0.19 -0.9 542,855 + RALBFv3_RS02430 0.19 -1.0 542,867 + RALBFv3_RS02430 0.21 +0.7 542,868 - RALBFv3_RS02430 0.21 +0.2 542,892 + RALBFv3_RS02430 0.26 -0.5 542,892 + RALBFv3_RS02430 0.26 +0.8 542,893 - RALBFv3_RS02430 0.26 +2.0 542,893 - RALBFv3_RS02430 0.26 -0.1 542,908 - RALBFv3_RS02430 0.29 +0.5 543,095 + RALBFv3_RS02430 0.64 +0.3 543,263 + -0.7 543,263 + -1.5 543,264 - -0.8 543,883 + +0.2 543,883 + +1.8 543,884 - +1.6 544,133 + -1.4 544,134 - +1.8 544,136 + +0.4
Or see this region's nucleotide sequence