Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01900 and RALBFv3_RS01905 are separated by 2 nucleotides RALBFv3_RS01905 and RALBFv3_RS23600 are separated by 347 nucleotides RALBFv3_RS23600 and RALBFv3_RS01910 are separated by 115 nucleotides RALBFv3_RS01910 and RALBFv3_RS23605 are separated by 123 nucleotides RALBFv3_RS23605 and RALBFv3_RS01915 are separated by 87 nucleotides RALBFv3_RS01915 and RALBFv3_RS01920 are separated by 10 nucleotides
RALBFv3_RS01900: RALBFv3_RS01900 - FAD-binding oxidoreductase, at 421,657 to 423,069
_RS01900
RALBFv3_RS01905: RALBFv3_RS01905 - hypothetical protein, at 423,072 to 423,281
_RS01905
RALBFv3_RS23600: RALBFv3_RS23600 - hypothetical protein, at 423,629 to 423,835
_RS23600
RALBFv3_RS01910: RALBFv3_RS01910 - tRNA-Arg, at 423,951 to 424,027
_RS01910
RALBFv3_RS23605: RALBFv3_RS23605 - DNA-binding protein, at 424,151 to 424,513
_RS23605
RALBFv3_RS01915: RALBFv3_RS01915 - hypothetical protein, at 424,601 to 424,999
_RS01915
RALBFv3_RS01920: RALBFv3_RS01920 - AAA family ATPase, at 425,010 to 425,798
_RS01920
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1
2 at 423.065 kb on + strand at 423.068 kb on - strand at 423.068 kb on - strand at 423.068 kb on - strand at 423.075 kb on + strand at 423.076 kb on - strand at 423.088 kb on + strand at 423.232 kb on + strand, within RALBFv3_RS01905 at 423.232 kb on + strand, within RALBFv3_RS01905 at 423.233 kb on - strand, within RALBFv3_RS01905 at 423.233 kb on - strand, within RALBFv3_RS01905 at 423.267 kb on - strand at 423.599 kb on + strand at 423.599 kb on + strand at 423.833 kb on + strand at 423.834 kb on - strand at 424.038 kb on + strand at 424.178 kb on - strand at 424.182 kb on - strand at 424.182 kb on - strand at 424.194 kb on - strand, within RALBFv3_RS23605 at 424.194 kb on - strand, within RALBFv3_RS23605 at 424.227 kb on - strand, within RALBFv3_RS23605 at 424.227 kb on - strand, within RALBFv3_RS23605 at 424.265 kb on + strand, within RALBFv3_RS23605 at 424.266 kb on - strand, within RALBFv3_RS23605 at 424.274 kb on + strand, within RALBFv3_RS23605 at 424.274 kb on + strand, within RALBFv3_RS23605 at 424.275 kb on - strand, within RALBFv3_RS23605 at 424.275 kb on - strand, within RALBFv3_RS23605 at 424.290 kb on - strand, within RALBFv3_RS23605 at 424.292 kb on + strand, within RALBFv3_RS23605 at 424.923 kb on + strand, within RALBFv3_RS01915 at 424.923 kb on + strand, within RALBFv3_RS01915 at 424.923 kb on + strand, within RALBFv3_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 423,065 + +0.7 423,068 - -0.8 423,068 - +0.5 423,068 - -0.5 423,075 + +0.5 423,076 - -0.8 423,088 + +0.2 423,232 + RALBFv3_RS01905 0.76 -1.0 423,232 + RALBFv3_RS01905 0.76 +1.3 423,233 - RALBFv3_RS01905 0.77 -2.3 423,233 - RALBFv3_RS01905 0.77 -1.5 423,267 - -0.5 423,599 + -0.9 423,599 + -0.6 423,833 + -0.2 423,834 - +0.8 424,038 + +0.4 424,178 - +0.2 424,182 - -0.7 424,182 - +0.5 424,194 - RALBFv3_RS23605 0.12 +0.1 424,194 - RALBFv3_RS23605 0.12 -0.3 424,227 - RALBFv3_RS23605 0.21 -0.5 424,227 - RALBFv3_RS23605 0.21 -1.0 424,265 + RALBFv3_RS23605 0.31 +1.8 424,266 - RALBFv3_RS23605 0.32 -0.5 424,274 + RALBFv3_RS23605 0.34 +0.0 424,274 + RALBFv3_RS23605 0.34 -1.1 424,275 - RALBFv3_RS23605 0.34 -0.1 424,275 - RALBFv3_RS23605 0.34 -0.5 424,290 - RALBFv3_RS23605 0.38 -0.6 424,292 + RALBFv3_RS23605 0.39 +0.4 424,923 + RALBFv3_RS01915 0.81 +1.5 424,923 + RALBFv3_RS01915 0.81 +0.8 424,923 + RALBFv3_RS01915 0.81 -0.4
Or see this region's nucleotide sequence