Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01625 and RALBFv3_RS01630 are separated by 10 nucleotides RALBFv3_RS01630 and RALBFv3_RS01635 are separated by 55 nucleotides RALBFv3_RS01635 and RALBFv3_RS01640 overlap by 4 nucleotides
RALBFv3_RS01625: RALBFv3_RS01625 - nitroreductase, at 364,222 to 364,929
_RS01625
RALBFv3_RS01630: RALBFv3_RS01630 - acyl-CoA thioesterase, at 364,940 to 365,386
_RS01630
RALBFv3_RS01635: RALBFv3_RS01635 - EamA/RhaT family transporter, at 365,442 to 366,359
_RS01635
RALBFv3_RS01640: RALBFv3_RS01640 - histone deacetylase, at 366,356 to 367,330
_RS01640
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 364.661 kb on + strand, within RALBFv3_RS01625 at 364.701 kb on - strand, within RALBFv3_RS01625 at 364.754 kb on + strand, within RALBFv3_RS01625 at 364.755 kb on - strand, within RALBFv3_RS01625 at 364.755 kb on - strand, within RALBFv3_RS01625 at 364.755 kb on - strand, within RALBFv3_RS01625 at 364.774 kb on - strand, within RALBFv3_RS01625 at 365.029 kb on - strand, within RALBFv3_RS01630 at 365.030 kb on + strand, within RALBFv3_RS01630 at 365.031 kb on - strand, within RALBFv3_RS01630 at 365.173 kb on - strand, within RALBFv3_RS01630 at 365.248 kb on - strand, within RALBFv3_RS01630 at 365.271 kb on + strand, within RALBFv3_RS01630 at 365.271 kb on + strand, within RALBFv3_RS01630 at 365.277 kb on + strand, within RALBFv3_RS01630 at 365.277 kb on + strand, within RALBFv3_RS01630 at 365.278 kb on - strand, within RALBFv3_RS01630 at 365.280 kb on + strand, within RALBFv3_RS01630 at 365.280 kb on + strand, within RALBFv3_RS01630 at 365.353 kb on - strand at 365.947 kb on - strand, within RALBFv3_RS01635 at 365.947 kb on - strand, within RALBFv3_RS01635 at 365.971 kb on + strand, within RALBFv3_RS01635 at 365.971 kb on + strand, within RALBFv3_RS01635 at 366.509 kb on - strand, within RALBFv3_RS01640 at 366.636 kb on + strand, within RALBFv3_RS01640 at 366.637 kb on - strand, within RALBFv3_RS01640 at 366.637 kb on - strand, within RALBFv3_RS01640 at 366.703 kb on - strand, within RALBFv3_RS01640 at 366.970 kb on - strand, within RALBFv3_RS01640 at 367.147 kb on + strand, within RALBFv3_RS01640 at 367.255 kb on - strand at 367.311 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 364,661 + RALBFv3_RS01625 0.62 -1.5 364,701 - RALBFv3_RS01625 0.68 +0.7 364,754 + RALBFv3_RS01625 0.75 -0.0 364,755 - RALBFv3_RS01625 0.75 +0.2 364,755 - RALBFv3_RS01625 0.75 -0.5 364,755 - RALBFv3_RS01625 0.75 +0.9 364,774 - RALBFv3_RS01625 0.78 -1.9 365,029 - RALBFv3_RS01630 0.20 -0.6 365,030 + RALBFv3_RS01630 0.20 +0.3 365,031 - RALBFv3_RS01630 0.20 +0.0 365,173 - RALBFv3_RS01630 0.52 -0.7 365,248 - RALBFv3_RS01630 0.69 +1.5 365,271 + RALBFv3_RS01630 0.74 +1.2 365,271 + RALBFv3_RS01630 0.74 +2.8 365,277 + RALBFv3_RS01630 0.75 +0.2 365,277 + RALBFv3_RS01630 0.75 -0.5 365,278 - RALBFv3_RS01630 0.76 +1.5 365,280 + RALBFv3_RS01630 0.76 -1.2 365,280 + RALBFv3_RS01630 0.76 +0.5 365,353 - +0.8 365,947 - RALBFv3_RS01635 0.55 -0.1 365,947 - RALBFv3_RS01635 0.55 -0.1 365,971 + RALBFv3_RS01635 0.58 -0.8 365,971 + RALBFv3_RS01635 0.58 -0.8 366,509 - RALBFv3_RS01640 0.16 -0.5 366,636 + RALBFv3_RS01640 0.29 +1.4 366,637 - RALBFv3_RS01640 0.29 -0.2 366,637 - RALBFv3_RS01640 0.29 -0.8 366,703 - RALBFv3_RS01640 0.36 -0.1 366,970 - RALBFv3_RS01640 0.63 +0.0 367,147 + RALBFv3_RS01640 0.81 +0.3 367,255 - -0.2 367,311 + +0.2
Or see this region's nucleotide sequence