Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS00570

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS00565 and RALBFv3_RS00570 are separated by 98 nucleotidesRALBFv3_RS00570 and RALBFv3_RS00575 overlap by 4 nucleotidesRALBFv3_RS00575 and RALBFv3_RS00580 are separated by 175 nucleotides RALBFv3_RS00565: RALBFv3_RS00565 - pca operon transcription factor PcaQ, at 127,789 to 128,736 _RS00565 RALBFv3_RS00570: RALBFv3_RS00570 - protocatechuate 3,4-dioxygenase subunit beta, at 128,835 to 129,575 _RS00570 RALBFv3_RS00575: RALBFv3_RS00575 - protocatechuate 3,4-dioxygenase subunit alpha, at 129,572 to 130,270 _RS00575 RALBFv3_RS00580: RALBFv3_RS00580 - RNA 2',3'-cyclic phosphodiesterase, at 130,446 to 131,009 _RS00580 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1at 127.969 kb on + strand, within RALBFv3_RS00565at 128.796 kb on - strandat 129.042 kb on + strand, within RALBFv3_RS00570at 129.187 kb on - strand, within RALBFv3_RS00570at 129.187 kb on - strand, within RALBFv3_RS00570at 129.253 kb on - strand, within RALBFv3_RS00570at 129.253 kb on - strand, within RALBFv3_RS00570at 129.330 kb on + strand, within RALBFv3_RS00570at 129.654 kb on - strand, within RALBFv3_RS00575at 129.727 kb on + strand, within RALBFv3_RS00575at 129.728 kb on - strand, within RALBFv3_RS00575at 129.731 kb on + strand, within RALBFv3_RS00575at 129.732 kb on - strand, within RALBFv3_RS00575at 129.876 kb on - strand, within RALBFv3_RS00575at 129.876 kb on - strand, within RALBFv3_RS00575at 129.876 kb on - strand, within RALBFv3_RS00575at 129.966 kb on - strand, within RALBFv3_RS00575at 130.086 kb on - strand, within RALBFv3_RS00575at 130.086 kb on - strand, within RALBFv3_RS00575at 130.203 kb on - strandat 130.571 kb on + strand, within RALBFv3_RS00580at 130.571 kb on + strand, within RALBFv3_RS00580at 130.571 kb on + strand, within RALBFv3_RS00580

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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127,969 + RALBFv3_RS00565 0.19 +1.1
128,796 - +0.7
129,042 + RALBFv3_RS00570 0.28 -0.3
129,187 - RALBFv3_RS00570 0.48 -0.1
129,187 - RALBFv3_RS00570 0.48 -0.3
129,253 - RALBFv3_RS00570 0.56 -1.3
129,253 - RALBFv3_RS00570 0.56 +0.8
129,330 + RALBFv3_RS00570 0.67 +1.0
129,654 - RALBFv3_RS00575 0.12 -1.3
129,727 + RALBFv3_RS00575 0.22 -0.6
129,728 - RALBFv3_RS00575 0.22 -0.8
129,731 + RALBFv3_RS00575 0.23 -0.8
129,732 - RALBFv3_RS00575 0.23 +1.5
129,876 - RALBFv3_RS00575 0.43 -0.7
129,876 - RALBFv3_RS00575 0.43 +1.1
129,876 - RALBFv3_RS00575 0.43 -1.8
129,966 - RALBFv3_RS00575 0.56 +0.7
130,086 - RALBFv3_RS00575 0.74 -0.7
130,086 - RALBFv3_RS00575 0.74 -0.1
130,203 - -0.8
130,571 + RALBFv3_RS00580 0.22 -0.4
130,571 + RALBFv3_RS00580 0.22 +0.0
130,571 + RALBFv3_RS00580 0.22 -0.6

Or see this region's nucleotide sequence