Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18705

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18695 and ABZR87_RS18700 are separated by 21 nucleotidesABZR87_RS18700 and ABZR87_RS18705 are separated by 24 nucleotidesABZR87_RS18705 and ABZR87_RS18710 are separated by 88 nucleotides ABZR87_RS18695: ABZR87_RS18695 - sugar-binding transcriptional regulator, at 547,186 to 548,139 _RS18695 ABZR87_RS18700: ABZR87_RS18700 - DUF1272 domain-containing protein, at 548,161 to 548,469 _RS18700 ABZR87_RS18705: ABZR87_RS18705 - TraB/GumN family protein, at 548,494 to 549,522 _RS18705 ABZR87_RS18710: ABZR87_RS18710 - hypothetical protein, at 549,611 to 550,792 _RS18710 Position (kb) 548 549 550Strain fitness (log2 ratio) -2 -1 0 1 2at 547.654 kb on + strand, within ABZR87_RS18695at 547.697 kb on - strand, within ABZR87_RS18695at 547.699 kb on + strand, within ABZR87_RS18695at 547.699 kb on + strand, within ABZR87_RS18695at 547.699 kb on + strand, within ABZR87_RS18695at 547.699 kb on + strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.769 kb on - strand, within ABZR87_RS18695at 547.769 kb on - strand, within ABZR87_RS18695at 547.769 kb on - strand, within ABZR87_RS18695at 547.977 kb on + strand, within ABZR87_RS18695at 547.977 kb on + strand, within ABZR87_RS18695at 547.977 kb on + strand, within ABZR87_RS18695at 547.978 kb on - strand, within ABZR87_RS18695at 548.313 kb on + strand, within ABZR87_RS18700at 548.313 kb on + strand, within ABZR87_RS18700at 548.314 kb on - strand, within ABZR87_RS18700at 548.371 kb on + strand, within ABZR87_RS18700at 548.371 kb on + strand, within ABZR87_RS18700at 548.371 kb on + strand, within ABZR87_RS18700at 548.372 kb on - strand, within ABZR87_RS18700at 548.382 kb on + strand, within ABZR87_RS18700at 548.383 kb on - strand, within ABZR87_RS18700at 548.383 kb on - strand, within ABZR87_RS18700at 548.475 kb on + strandat 548.534 kb on + strandat 548.534 kb on + strandat 548.534 kb on + strandat 548.534 kb on + strandat 548.729 kb on + strand, within ABZR87_RS18705at 548.729 kb on + strand, within ABZR87_RS18705at 548.933 kb on + strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.969 kb on + strand, within ABZR87_RS18705at 549.278 kb on + strand, within ABZR87_RS18705at 549.539 kb on + strandat 549.539 kb on + strandat 549.540 kb on - strandat 549.563 kb on + strandat 549.563 kb on + strandat 549.564 kb on - strandat 549.612 kb on + strandat 549.612 kb on + strandat 549.612 kb on + strandat 549.613 kb on - strandat 549.694 kb on - strandat 549.694 kb on - strandat 549.694 kb on - strandat 549.694 kb on - strandat 549.767 kb on - strand, within ABZR87_RS18710at 549.767 kb on - strand, within ABZR87_RS18710at 549.798 kb on + strand, within ABZR87_RS18710at 549.799 kb on - strand, within ABZR87_RS18710at 549.799 kb on - strand, within ABZR87_RS18710at 549.799 kb on - strand, within ABZR87_RS18710at 549.831 kb on + strand, within ABZR87_RS18710at 549.832 kb on - strand, within ABZR87_RS18710at 549.895 kb on - strand, within ABZR87_RS18710at 549.895 kb on - strand, within ABZR87_RS18710at 550.113 kb on + strand, within ABZR87_RS18710at 550.114 kb on - strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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547,654 + ABZR87_RS18695 0.49 -0.2
547,697 - ABZR87_RS18695 0.54 -0.2
547,699 + ABZR87_RS18695 0.54 -1.1
547,699 + ABZR87_RS18695 0.54 +0.1
547,699 + ABZR87_RS18695 0.54 -0.8
547,699 + ABZR87_RS18695 0.54 -0.7
547,700 - ABZR87_RS18695 0.54 +1.0
547,700 - ABZR87_RS18695 0.54 +0.6
547,700 - ABZR87_RS18695 0.54 -0.6
547,700 - ABZR87_RS18695 0.54 +0.6
547,700 - ABZR87_RS18695 0.54 +0.1
547,700 - ABZR87_RS18695 0.54 +0.1
547,700 - ABZR87_RS18695 0.54 +0.2
547,769 - ABZR87_RS18695 0.61 -0.8
547,769 - ABZR87_RS18695 0.61 -0.2
547,769 - ABZR87_RS18695 0.61 +0.6
547,977 + ABZR87_RS18695 0.83 +0.2
547,977 + ABZR87_RS18695 0.83 +0.2
547,977 + ABZR87_RS18695 0.83 -0.7
547,978 - ABZR87_RS18695 0.83 -0.6
548,313 + ABZR87_RS18700 0.49 +0.1
548,313 + ABZR87_RS18700 0.49 +0.8
548,314 - ABZR87_RS18700 0.50 -0.6
548,371 + ABZR87_RS18700 0.68 +0.4
548,371 + ABZR87_RS18700 0.68 +0.4
548,371 + ABZR87_RS18700 0.68 +0.9
548,372 - ABZR87_RS18700 0.68 -0.2
548,382 + ABZR87_RS18700 0.72 -1.8
548,383 - ABZR87_RS18700 0.72 -1.2
548,383 - ABZR87_RS18700 0.72 -0.3
548,475 + -0.2
548,534 + +0.7
548,534 + -0.5
548,534 + +0.5
548,534 + -0.5
548,729 + ABZR87_RS18705 0.23 +0.0
548,729 + ABZR87_RS18705 0.23 +0.6
548,933 + ABZR87_RS18705 0.43 -1.5
548,934 - ABZR87_RS18705 0.43 -0.3
548,934 - ABZR87_RS18705 0.43 -1.1
548,934 - ABZR87_RS18705 0.43 +0.0
548,934 - ABZR87_RS18705 0.43 -0.9
548,969 + ABZR87_RS18705 0.46 +0.5
549,278 + ABZR87_RS18705 0.76 -0.6
549,539 + +0.3
549,539 + +0.6
549,540 - +1.8
549,563 + +0.0
549,563 + -0.9
549,564 - +0.8
549,612 + +0.3
549,612 + -0.1
549,612 + +0.5
549,613 - -0.3
549,694 - -1.6
549,694 - +0.7
549,694 - +0.8
549,694 - +1.4
549,767 - ABZR87_RS18710 0.13 +1.0
549,767 - ABZR87_RS18710 0.13 -0.5
549,798 + ABZR87_RS18710 0.16 -0.6
549,799 - ABZR87_RS18710 0.16 +1.0
549,799 - ABZR87_RS18710 0.16 -0.7
549,799 - ABZR87_RS18710 0.16 +1.1
549,831 + ABZR87_RS18710 0.19 -0.6
549,832 - ABZR87_RS18710 0.19 -0.1
549,895 - ABZR87_RS18710 0.24 -1.0
549,895 - ABZR87_RS18710 0.24 +0.6
550,113 + ABZR87_RS18710 0.42 -0.6
550,114 - ABZR87_RS18710 0.43 -0.5
550,125 + ABZR87_RS18710 0.43 -0.4
550,125 + ABZR87_RS18710 0.43 +0.5
550,125 + ABZR87_RS18710 0.43 +0.3
550,125 + ABZR87_RS18710 0.43 +0.7
550,125 + ABZR87_RS18710 0.43 -0.1
550,125 + ABZR87_RS18710 0.43 -0.5
550,125 + ABZR87_RS18710 0.43 +0.3
550,125 + ABZR87_RS18710 0.43 +0.8
550,125 + ABZR87_RS18710 0.43 -0.5
550,125 + ABZR87_RS18710 0.43 +0.2
550,125 + ABZR87_RS18710 0.43 +0.2
550,125 + ABZR87_RS18710 0.43 +2.0
550,126 - ABZR87_RS18710 0.44 -0.7
550,126 - ABZR87_RS18710 0.44 +1.2
550,126 - ABZR87_RS18710 0.44 -1.3
550,126 - ABZR87_RS18710 0.44 -0.1
550,126 - ABZR87_RS18710 0.44 -0.2
550,126 - ABZR87_RS18710 0.44 +1.1
550,378 - ABZR87_RS18710 0.65 -1.9
550,378 - ABZR87_RS18710 0.65 -2.1
550,378 - ABZR87_RS18710 0.65 +0.6
550,378 - ABZR87_RS18710 0.65 +0.2
550,378 - ABZR87_RS18710 0.65 +0.1
550,450 + ABZR87_RS18710 0.71 -0.5
550,450 + ABZR87_RS18710 0.71 +0.4
550,450 + ABZR87_RS18710 0.71 +0.5
550,450 + ABZR87_RS18710 0.71 -0.1
550,451 - ABZR87_RS18710 0.71 +0.6
550,451 - ABZR87_RS18710 0.71 +0.6
550,451 - ABZR87_RS18710 0.71 +0.8

Or see this region's nucleotide sequence