Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17045

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17035 and ABZR87_RS17040 are separated by 456 nucleotidesABZR87_RS17040 and ABZR87_RS17045 are separated by 20 nucleotidesABZR87_RS17045 and ABZR87_RS17050 are separated by 87 nucleotidesABZR87_RS17050 and ABZR87_RS17055 are separated by 97 nucleotides ABZR87_RS17035: ABZR87_RS17035 - spherulation-specific family 4 protein, at 172,876 to 173,730 _RS17035 ABZR87_RS17040: ABZR87_RS17040 - hypothetical protein, at 174,187 to 174,642 _RS17040 ABZR87_RS17045: ABZR87_RS17045 - LysR family transcriptional regulator, at 174,663 to 175,556 _RS17045 ABZR87_RS17050: ABZR87_RS17050 - NAD(P)H-dependent oxidoreductase, at 175,644 to 176,432 _RS17050 ABZR87_RS17055: ABZR87_RS17055 - sulfite exporter TauE/SafE family protein, at 176,530 to 177,312 _RS17055 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 173.828 kb on + strandat 173.828 kb on + strandat 173.828 kb on + strandat 173.828 kb on + strandat 173.828 kb on + strandat 173.829 kb on - strandat 173.830 kb on + strandat 173.830 kb on + strandat 173.830 kb on + strandat 173.831 kb on - strandat 173.831 kb on - strandat 173.831 kb on - strandat 173.831 kb on - strandat 174.164 kb on + strandat 174.164 kb on + strandat 174.164 kb on + strandat 174.164 kb on + strandat 174.165 kb on - strandat 174.165 kb on - strandat 174.165 kb on - strandat 174.326 kb on - strand, within ABZR87_RS17040at 174.326 kb on - strand, within ABZR87_RS17040at 174.358 kb on + strand, within ABZR87_RS17040at 174.358 kb on + strand, within ABZR87_RS17040at 174.359 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.410 kb on - strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.469 kb on + strand, within ABZR87_RS17040at 174.470 kb on - strand, within ABZR87_RS17040at 174.470 kb on - strand, within ABZR87_RS17040at 174.470 kb on - strand, within ABZR87_RS17040at 174.470 kb on - strand, within ABZR87_RS17040at 174.589 kb on + strand, within ABZR87_RS17040at 174.589 kb on + strand, within ABZR87_RS17040at 174.590 kb on - strand, within ABZR87_RS17040at 175.042 kb on + strand, within ABZR87_RS17045at 175.043 kb on - strand, within ABZR87_RS17045at 175.043 kb on - strand, within ABZR87_RS17045at 175.061 kb on + strand, within ABZR87_RS17045at 175.062 kb on - strand, within ABZR87_RS17045at 175.149 kb on - strand, within ABZR87_RS17045at 175.237 kb on + strand, within ABZR87_RS17045at 175.550 kb on + strandat 175.560 kb on + strandat 175.594 kb on - strandat 175.663 kb on - strandat 175.663 kb on - strandat 175.663 kb on - strandat 175.761 kb on + strand, within ABZR87_RS17050at 175.851 kb on + strand, within ABZR87_RS17050at 175.851 kb on + strand, within ABZR87_RS17050at 175.993 kb on - strand, within ABZR87_RS17050at 175.998 kb on + strand, within ABZR87_RS17050at 175.998 kb on + strand, within ABZR87_RS17050at 175.999 kb on - strand, within ABZR87_RS17050at 175.999 kb on - strand, within ABZR87_RS17050at 176.121 kb on + strand, within ABZR87_RS17050at 176.121 kb on + strand, within ABZR87_RS17050at 176.122 kb on - strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.227 kb on - strand, within ABZR87_RS17050at 176.346 kb on + strand, within ABZR87_RS17050at 176.346 kb on + strand, within ABZR87_RS17050at 176.431 kb on - strandat 176.443 kb on + strandat 176.476 kb on + strandat 176.483 kb on + strandat 176.483 kb on + strandat 176.484 kb on - strandat 176.484 kb on - strandat 176.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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173,828 + +0.8
173,828 + +0.6
173,828 + +0.4
173,828 + -2.0
173,828 + +0.9
173,829 - +0.7
173,830 + +0.3
173,830 + -1.3
173,830 + -0.2
173,831 - +0.2
173,831 - -1.1
173,831 - -1.7
173,831 - +0.2
174,164 + +0.1
174,164 + -0.5
174,164 + +1.2
174,164 + -1.9
174,165 - -1.5
174,165 - +0.2
174,165 - +0.1
174,326 - ABZR87_RS17040 0.30 -1.6
174,326 - ABZR87_RS17040 0.30 -1.8
174,358 + ABZR87_RS17040 0.38 -0.3
174,358 + ABZR87_RS17040 0.38 +0.5
174,359 - ABZR87_RS17040 0.38 -0.2
174,410 - ABZR87_RS17040 0.49 -0.2
174,410 - ABZR87_RS17040 0.49 +0.4
174,410 - ABZR87_RS17040 0.49 +0.0
174,410 - ABZR87_RS17040 0.49 -0.4
174,410 - ABZR87_RS17040 0.49 +1.2
174,469 + ABZR87_RS17040 0.62 +1.7
174,469 + ABZR87_RS17040 0.62 +0.8
174,469 + ABZR87_RS17040 0.62 +0.0
174,469 + ABZR87_RS17040 0.62 +1.5
174,469 + ABZR87_RS17040 0.62 -0.6
174,470 - ABZR87_RS17040 0.62 -0.1
174,470 - ABZR87_RS17040 0.62 -0.4
174,470 - ABZR87_RS17040 0.62 -1.1
174,470 - ABZR87_RS17040 0.62 -0.9
174,589 + ABZR87_RS17040 0.88 -0.5
174,589 + ABZR87_RS17040 0.88 +1.0
174,590 - ABZR87_RS17040 0.88 +0.6
175,042 + ABZR87_RS17045 0.42 -0.8
175,043 - ABZR87_RS17045 0.43 -0.0
175,043 - ABZR87_RS17045 0.43 -0.6
175,061 + ABZR87_RS17045 0.45 +0.4
175,062 - ABZR87_RS17045 0.45 -0.1
175,149 - ABZR87_RS17045 0.54 -1.5
175,237 + ABZR87_RS17045 0.64 -0.4
175,550 + +4.0
175,560 + +0.1
175,594 - -0.2
175,663 - +2.0
175,663 - -0.5
175,663 - -0.2
175,761 + ABZR87_RS17050 0.15 +0.3
175,851 + ABZR87_RS17050 0.26 +0.8
175,851 + ABZR87_RS17050 0.26 -0.2
175,993 - ABZR87_RS17050 0.44 -0.3
175,998 + ABZR87_RS17050 0.45 -0.5
175,998 + ABZR87_RS17050 0.45 -0.2
175,999 - ABZR87_RS17050 0.45 +1.1
175,999 - ABZR87_RS17050 0.45 -0.5
176,121 + ABZR87_RS17050 0.60 -0.9
176,121 + ABZR87_RS17050 0.60 +1.0
176,122 - ABZR87_RS17050 0.61 -0.2
176,187 + ABZR87_RS17050 0.69 +0.5
176,187 + ABZR87_RS17050 0.69 +0.5
176,187 + ABZR87_RS17050 0.69 -0.4
176,187 + ABZR87_RS17050 0.69 -0.9
176,187 + ABZR87_RS17050 0.69 -0.6
176,188 - ABZR87_RS17050 0.69 +0.6
176,188 - ABZR87_RS17050 0.69 +1.2
176,188 - ABZR87_RS17050 0.69 -0.7
176,188 - ABZR87_RS17050 0.69 -1.1
176,191 - ABZR87_RS17050 0.69 -0.3
176,191 - ABZR87_RS17050 0.69 -1.8
176,191 - ABZR87_RS17050 0.69 -0.3
176,227 - ABZR87_RS17050 0.74 +0.5
176,346 + ABZR87_RS17050 0.89 +0.6
176,346 + ABZR87_RS17050 0.89 -0.4
176,431 - +0.2
176,443 + -0.0
176,476 + -0.7
176,483 + +0.2
176,483 + +0.8
176,484 - +0.1
176,484 - +1.4
176,484 - -1.4

Or see this region's nucleotide sequence