Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16760

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16755 and ABZR87_RS16760 are separated by 239 nucleotidesABZR87_RS16760 and ABZR87_RS16765 are separated by 23 nucleotidesABZR87_RS16765 and ABZR87_RS16770 are separated by 205 nucleotides ABZR87_RS16755: ABZR87_RS16755 - HD-GYP domain-containing protein, at 110,215 to 110,982 _RS16755 ABZR87_RS16760: ABZR87_RS16760 - GGDEF domain-containing protein, at 111,222 to 112,568 _RS16760 ABZR87_RS16765: ABZR87_RS16765 - isochorismatase family cysteine hydrolase, at 112,592 to 113,161 _RS16765 ABZR87_RS16770: ABZR87_RS16770 - HD domain-containing phosphohydrolase, at 113,367 to 116,309 _RS16770 Position (kb) 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.398 kb on + strand, within ABZR87_RS16755at 110.446 kb on + strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.447 kb on - strand, within ABZR87_RS16755at 110.529 kb on - strand, within ABZR87_RS16755at 110.529 kb on - strand, within ABZR87_RS16755at 110.562 kb on - strand, within ABZR87_RS16755at 110.891 kb on + strand, within ABZR87_RS16755at 110.891 kb on + strand, within ABZR87_RS16755at 110.892 kb on - strand, within ABZR87_RS16755at 110.899 kb on + strand, within ABZR87_RS16755at 110.967 kb on + strandat 110.967 kb on + strandat 110.967 kb on + strandat 110.968 kb on - strandat 110.968 kb on - strandat 110.968 kb on - strandat 111.141 kb on + strandat 111.141 kb on + strandat 111.141 kb on + strandat 111.142 kb on - strandat 111.142 kb on - strandat 111.142 kb on - strandat 111.213 kb on + strandat 111.213 kb on + strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.214 kb on - strandat 111.318 kb on + strandat 111.318 kb on + strandat 111.319 kb on - strandat 111.319 kb on - strandat 111.319 kb on - strandat 111.321 kb on + strandat 111.382 kb on + strand, within ABZR87_RS16760at 111.382 kb on + strand, within ABZR87_RS16760at 111.382 kb on + strand, within ABZR87_RS16760at 111.382 kb on + strand, within ABZR87_RS16760at 112.067 kb on + strand, within ABZR87_RS16760at 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.525 kb on - strandat 112.525 kb on - strandat 112.594 kb on - strandat 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.693 kb on - strand, within ABZR87_RS16765at 112.722 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.840 kb on - strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.008 kb on - strand, within ABZR87_RS16765at 113.109 kb on + strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.162 kb on - strandat 113.168 kb on - strandat 113.168 kb on - strandat 113.199 kb on + strandat 113.200 kb on - strandat 113.200 kb on - strandat 113.200 kb on - strandat 113.321 kb on + strandat 113.321 kb on + strandat 113.322 kb on - strandat 113.342 kb on + strandat 113.342 kb on + strandat 113.343 kb on - strandat 113.343 kb on - strandat 113.345 kb on + strandat 113.346 kb on - strandat 113.428 kb on + strandat 113.428 kb on + strandat 113.429 kb on - strandat 113.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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110,398 + ABZR87_RS16755 0.24 +0.7
110,446 + ABZR87_RS16755 0.30 +0.0
110,447 - ABZR87_RS16755 0.30 +0.0
110,447 - ABZR87_RS16755 0.30 +1.7
110,447 - ABZR87_RS16755 0.30 +0.7
110,447 - ABZR87_RS16755 0.30 +0.2
110,447 - ABZR87_RS16755 0.30 +0.2
110,529 - ABZR87_RS16755 0.41 +0.2
110,529 - ABZR87_RS16755 0.41 +0.6
110,562 - ABZR87_RS16755 0.45 +0.3
110,891 + ABZR87_RS16755 0.88 -0.1
110,891 + ABZR87_RS16755 0.88 -0.6
110,892 - ABZR87_RS16755 0.88 +1.0
110,899 + ABZR87_RS16755 0.89 +1.4
110,967 + +0.2
110,967 + -0.0
110,967 + -0.7
110,968 - -2.4
110,968 - -0.2
110,968 - +0.1
111,141 + +1.0
111,141 + +0.4
111,141 + +0.9
111,142 - -1.1
111,142 - -1.0
111,142 - +0.1
111,213 + +0.4
111,213 + +0.4
111,214 - +1.9
111,214 - +0.1
111,214 - -0.3
111,214 - -0.1
111,214 - +1.0
111,214 - +0.7
111,214 - -0.1
111,318 + +0.3
111,318 + -0.8
111,319 - -1.7
111,319 - -0.3
111,319 - +1.0
111,321 + +0.9
111,382 + ABZR87_RS16760 0.12 -0.9
111,382 + ABZR87_RS16760 0.12 +0.1
111,382 + ABZR87_RS16760 0.12 -1.9
111,382 + ABZR87_RS16760 0.12 -0.6
112,067 + ABZR87_RS16760 0.63 -1.0
112,524 + -1.2
112,524 + -0.4
112,524 + -0.1
112,524 + +0.3
112,524 + +0.2
112,524 + +1.1
112,525 - -2.8
112,525 - +0.0
112,594 - +1.8
112,692 + ABZR87_RS16765 0.18 -1.7
112,692 + ABZR87_RS16765 0.18 +0.2
112,692 + ABZR87_RS16765 0.18 +0.9
112,692 + ABZR87_RS16765 0.18 -0.1
112,693 - ABZR87_RS16765 0.18 +0.3
112,722 + ABZR87_RS16765 0.23 -1.7
112,795 + ABZR87_RS16765 0.36 +0.7
112,795 + ABZR87_RS16765 0.36 +0.1
112,795 + ABZR87_RS16765 0.36 -0.3
112,795 + ABZR87_RS16765 0.36 +0.3
112,795 + ABZR87_RS16765 0.36 +1.4
112,796 - ABZR87_RS16765 0.36 -0.1
112,796 - ABZR87_RS16765 0.36 -0.3
112,796 - ABZR87_RS16765 0.36 +0.3
112,796 - ABZR87_RS16765 0.36 +0.4
112,796 - ABZR87_RS16765 0.36 -2.1
112,840 - ABZR87_RS16765 0.44 -0.9
113,007 + ABZR87_RS16765 0.73 +0.8
113,007 + ABZR87_RS16765 0.73 -1.1
113,007 + ABZR87_RS16765 0.73 +0.1
113,008 - ABZR87_RS16765 0.73 -1.0
113,109 + -0.9
113,110 - -1.9
113,110 - -0.1
113,110 - -0.3
113,110 - -1.1
113,161 + -0.0
113,161 + -0.2
113,161 + +2.0
113,161 + -0.4
113,162 - +0.4
113,168 - +0.2
113,168 - -1.1
113,199 + +1.0
113,200 - +1.9
113,200 - -1.7
113,200 - -1.7
113,321 + +0.5
113,321 + +0.2
113,322 - +0.0
113,342 + +2.3
113,342 + -0.5
113,343 - +0.4
113,343 - +0.9
113,345 + +0.7
113,346 - +0.5
113,428 + -0.4
113,428 + -0.3
113,429 - -1.0
113,429 - +0.1

Or see this region's nucleotide sequence