Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16640

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16635 and ABZR87_RS16640 are separated by 173 nucleotidesABZR87_RS16640 and ABZR87_RS16645 are separated by 2 nucleotidesABZR87_RS16645 and ABZR87_RS16650 are separated by 79 nucleotides ABZR87_RS16635: ABZR87_RS16635 - MFS family transporter, at 82,554 to 83,858 _RS16635 ABZR87_RS16640: ABZR87_RS16640 - addiction module antidote protein, at 84,032 to 84,334 _RS16640 ABZR87_RS16645: ABZR87_RS16645 - type II toxin-antitoxin system RelE/ParE family toxin, at 84,337 to 84,636 _RS16645 ABZR87_RS16650: ABZR87_RS16650 - MFS transporter, at 84,716 to 85,930 _RS16650 Position (kb) 84 85Strain fitness (log2 ratio) -2 -1 0 1 2 3at 83.059 kb on + strand, within ABZR87_RS16635at 83.059 kb on + strand, within ABZR87_RS16635at 83.059 kb on + strand, within ABZR87_RS16635at 83.059 kb on + strand, within ABZR87_RS16635at 83.060 kb on - strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.086 kb on + strand, within ABZR87_RS16635at 83.086 kb on + strand, within ABZR87_RS16635at 83.087 kb on - strand, within ABZR87_RS16635at 83.087 kb on - strand, within ABZR87_RS16635at 83.112 kb on - strand, within ABZR87_RS16635at 83.227 kb on + strand, within ABZR87_RS16635at 83.228 kb on - strand, within ABZR87_RS16635at 83.228 kb on - strand, within ABZR87_RS16635at 83.228 kb on - strand, within ABZR87_RS16635at 83.368 kb on + strand, within ABZR87_RS16635at 83.368 kb on + strand, within ABZR87_RS16635at 83.368 kb on + strand, within ABZR87_RS16635at 83.368 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.423 kb on - strand, within ABZR87_RS16635at 83.423 kb on - strand, within ABZR87_RS16635at 83.423 kb on - strand, within ABZR87_RS16635at 83.441 kb on - strand, within ABZR87_RS16635at 83.518 kb on + strand, within ABZR87_RS16635at 83.518 kb on + strand, within ABZR87_RS16635at 83.519 kb on - strand, within ABZR87_RS16635at 83.519 kb on - strand, within ABZR87_RS16635at 83.726 kb on - strand, within ABZR87_RS16635at 83.743 kb on + strandat 83.743 kb on + strandat 83.749 kb on + strandat 83.749 kb on + strandat 83.749 kb on + strandat 83.749 kb on + strandat 83.749 kb on + strandat 83.749 kb on + strandat 83.750 kb on - strandat 83.750 kb on - strandat 83.750 kb on - strandat 83.750 kb on - strandat 83.853 kb on - strandat 83.853 kb on - strandat 83.853 kb on - strandat 83.894 kb on + strandat 83.895 kb on - strandat 83.997 kb on + strandat 83.997 kb on + strandat 84.034 kb on - strandat 84.034 kb on - strandat 84.034 kb on - strandat 84.034 kb on - strandat 84.034 kb on - strandat 84.034 kb on - strandat 84.126 kb on + strand, within ABZR87_RS16640at 84.126 kb on + strand, within ABZR87_RS16640at 84.126 kb on + strand, within ABZR87_RS16640at 84.126 kb on + strand, within ABZR87_RS16640at 84.126 kb on + strand, within ABZR87_RS16640at 84.126 kb on + strand, within ABZR87_RS16640at 84.127 kb on - strand, within ABZR87_RS16640at 84.127 kb on - strand, within ABZR87_RS16640at 84.191 kb on + strand, within ABZR87_RS16640at 84.191 kb on + strand, within ABZR87_RS16640at 84.255 kb on + strand, within ABZR87_RS16640at 84.256 kb on - strand, within ABZR87_RS16640at 84.256 kb on - strand, within ABZR87_RS16640at 84.256 kb on - strand, within ABZR87_RS16640at 84.415 kb on + strand, within ABZR87_RS16645at 84.415 kb on + strand, within ABZR87_RS16645at 84.415 kb on + strand, within ABZR87_RS16645at 84.415 kb on + strand, within ABZR87_RS16645at 84.415 kb on + strand, within ABZR87_RS16645at 84.415 kb on + strand, within ABZR87_RS16645at 84.415 kb on + strand, within ABZR87_RS16645at 84.415 kb on + strand, within ABZR87_RS16645at 84.416 kb on - strand, within ABZR87_RS16645at 84.416 kb on - strand, within ABZR87_RS16645at 84.416 kb on - strand, within ABZR87_RS16645at 84.416 kb on - strand, within ABZR87_RS16645at 84.452 kb on + strand, within ABZR87_RS16645at 84.453 kb on - strand, within ABZR87_RS16645at 84.453 kb on - strand, within ABZR87_RS16645at 84.484 kb on + strand, within ABZR87_RS16645at 84.484 kb on + strand, within ABZR87_RS16645at 84.484 kb on + strand, within ABZR87_RS16645at 84.484 kb on + strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.485 kb on - strand, within ABZR87_RS16645at 84.538 kb on + strand, within ABZR87_RS16645at 84.538 kb on + strand, within ABZR87_RS16645at 84.538 kb on + strand, within ABZR87_RS16645at 84.539 kb on - strand, within ABZR87_RS16645at 84.539 kb on - strand, within ABZR87_RS16645at 84.539 kb on - strand, within ABZR87_RS16645at 84.553 kb on + strand, within ABZR87_RS16645at 84.553 kb on + strand, within ABZR87_RS16645at 84.553 kb on + strand, within ABZR87_RS16645at 84.553 kb on + strand, within ABZR87_RS16645at 84.618 kb on + strandat 84.618 kb on + strandat 84.618 kb on + strandat 84.618 kb on + strandat 84.619 kb on - strandat 84.619 kb on - strandat 84.619 kb on - strandat 84.619 kb on - strandat 84.619 kb on - strandat 84.718 kb on - strandat 84.718 kb on - strandat 84.837 kb on + strandat 84.837 kb on + strandat 84.838 kb on - strand, within ABZR87_RS16650at 84.918 kb on + strand, within ABZR87_RS16650at 84.918 kb on + strand, within ABZR87_RS16650at 84.918 kb on + strand, within ABZR87_RS16650at 84.918 kb on + strand, within ABZR87_RS16650at 84.919 kb on - strand, within ABZR87_RS16650at 84.919 kb on - strand, within ABZR87_RS16650at 84.919 kb on - strand, within ABZR87_RS16650at 84.959 kb on + strand, within ABZR87_RS16650at 84.959 kb on + strand, within ABZR87_RS16650at 84.960 kb on - strand, within ABZR87_RS16650at 84.960 kb on - strand, within ABZR87_RS16650at 85.174 kb on + strand, within ABZR87_RS16650at 85.174 kb on + strand, within ABZR87_RS16650at 85.182 kb on - strand, within ABZR87_RS16650at 85.182 kb on - strand, within ABZR87_RS16650at 85.182 kb on - strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.308 kb on + strand, within ABZR87_RS16650at 85.308 kb on + strand, within ABZR87_RS16650at 85.309 kb on - strand, within ABZR87_RS16650at 85.309 kb on - strand, within ABZR87_RS16650

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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83,059 + ABZR87_RS16635 0.39 -0.8
83,059 + ABZR87_RS16635 0.39 +0.9
83,059 + ABZR87_RS16635 0.39 -0.5
83,059 + ABZR87_RS16635 0.39 +0.7
83,060 - ABZR87_RS16635 0.39 -0.1
83,071 + ABZR87_RS16635 0.40 +2.6
83,071 + ABZR87_RS16635 0.40 -0.6
83,071 + ABZR87_RS16635 0.40 +1.2
83,071 + ABZR87_RS16635 0.40 +0.4
83,071 + ABZR87_RS16635 0.40 -0.3
83,071 + ABZR87_RS16635 0.40 -0.6
83,072 - ABZR87_RS16635 0.40 +0.0
83,072 - ABZR87_RS16635 0.40 +0.2
83,072 - ABZR87_RS16635 0.40 +0.4
83,072 - ABZR87_RS16635 0.40 -0.2
83,072 - ABZR87_RS16635 0.40 +1.4
83,086 + ABZR87_RS16635 0.41 -0.3
83,086 + ABZR87_RS16635 0.41 -0.8
83,087 - ABZR87_RS16635 0.41 +0.2
83,087 - ABZR87_RS16635 0.41 +1.2
83,112 - ABZR87_RS16635 0.43 -0.0
83,227 + ABZR87_RS16635 0.52 +0.2
83,228 - ABZR87_RS16635 0.52 -2.1
83,228 - ABZR87_RS16635 0.52 -1.5
83,228 - ABZR87_RS16635 0.52 -2.3
83,368 + ABZR87_RS16635 0.62 +0.6
83,368 + ABZR87_RS16635 0.62 -2.1
83,368 + ABZR87_RS16635 0.62 +0.4
83,368 + ABZR87_RS16635 0.62 +0.4
83,422 + ABZR87_RS16635 0.67 -1.2
83,422 + ABZR87_RS16635 0.67 +0.6
83,422 + ABZR87_RS16635 0.67 -0.0
83,422 + ABZR87_RS16635 0.67 -0.4
83,422 + ABZR87_RS16635 0.67 +0.4
83,423 - ABZR87_RS16635 0.67 +0.0
83,423 - ABZR87_RS16635 0.67 -1.2
83,423 - ABZR87_RS16635 0.67 -0.8
83,441 - ABZR87_RS16635 0.68 -0.1
83,518 + ABZR87_RS16635 0.74 +2.9
83,518 + ABZR87_RS16635 0.74 +3.4
83,519 - ABZR87_RS16635 0.74 +0.7
83,519 - ABZR87_RS16635 0.74 -0.2
83,726 - ABZR87_RS16635 0.90 -1.5
83,743 + +0.1
83,743 + +0.2
83,749 + +1.1
83,749 + +0.1
83,749 + +0.9
83,749 + +0.1
83,749 + -0.2
83,749 + +0.4
83,750 - -1.0
83,750 - +0.6
83,750 - +0.4
83,750 - -0.9
83,853 - +1.1
83,853 - +0.1
83,853 - -0.5
83,894 + -2.2
83,895 - -0.8
83,997 + +0.2
83,997 + +0.3
84,034 - +0.0
84,034 - -1.3
84,034 - -0.5
84,034 - -0.3
84,034 - +0.2
84,034 - +0.7
84,126 + ABZR87_RS16640 0.31 +1.2
84,126 + ABZR87_RS16640 0.31 +2.0
84,126 + ABZR87_RS16640 0.31 +0.5
84,126 + ABZR87_RS16640 0.31 -0.0
84,126 + ABZR87_RS16640 0.31 -0.3
84,126 + ABZR87_RS16640 0.31 +1.0
84,127 - ABZR87_RS16640 0.31 +0.6
84,127 - ABZR87_RS16640 0.31 +0.2
84,191 + ABZR87_RS16640 0.52 +1.4
84,191 + ABZR87_RS16640 0.52 +0.2
84,255 + ABZR87_RS16640 0.74 -0.4
84,256 - ABZR87_RS16640 0.74 +0.7
84,256 - ABZR87_RS16640 0.74 +0.2
84,256 - ABZR87_RS16640 0.74 -0.1
84,415 + ABZR87_RS16645 0.26 -0.9
84,415 + ABZR87_RS16645 0.26 +0.1
84,415 + ABZR87_RS16645 0.26 +0.1
84,415 + ABZR87_RS16645 0.26 -0.1
84,415 + ABZR87_RS16645 0.26 -0.2
84,415 + ABZR87_RS16645 0.26 -0.2
84,415 + ABZR87_RS16645 0.26 +0.3
84,415 + ABZR87_RS16645 0.26 -0.2
84,416 - ABZR87_RS16645 0.26 -0.1
84,416 - ABZR87_RS16645 0.26 -0.8
84,416 - ABZR87_RS16645 0.26 +0.5
84,416 - ABZR87_RS16645 0.26 -0.3
84,452 + ABZR87_RS16645 0.38 +1.2
84,453 - ABZR87_RS16645 0.39 +0.3
84,453 - ABZR87_RS16645 0.39 -1.7
84,484 + ABZR87_RS16645 0.49 -0.4
84,484 + ABZR87_RS16645 0.49 -1.1
84,484 + ABZR87_RS16645 0.49 -1.1
84,484 + ABZR87_RS16645 0.49 +0.4
84,485 - ABZR87_RS16645 0.49 -1.4
84,485 - ABZR87_RS16645 0.49 +1.4
84,485 - ABZR87_RS16645 0.49 +0.4
84,485 - ABZR87_RS16645 0.49 +0.2
84,485 - ABZR87_RS16645 0.49 +0.5
84,485 - ABZR87_RS16645 0.49 +0.3
84,485 - ABZR87_RS16645 0.49 +0.0
84,485 - ABZR87_RS16645 0.49 -1.4
84,485 - ABZR87_RS16645 0.49 -0.1
84,538 + ABZR87_RS16645 0.67 +1.1
84,538 + ABZR87_RS16645 0.67 +0.2
84,538 + ABZR87_RS16645 0.67 -0.2
84,539 - ABZR87_RS16645 0.67 +0.4
84,539 - ABZR87_RS16645 0.67 +1.1
84,539 - ABZR87_RS16645 0.67 +0.3
84,553 + ABZR87_RS16645 0.72 -0.3
84,553 + ABZR87_RS16645 0.72 +0.8
84,553 + ABZR87_RS16645 0.72 +0.4
84,553 + ABZR87_RS16645 0.72 +0.3
84,618 + +1.4
84,618 + +1.3
84,618 + +0.1
84,618 + +0.8
84,619 - +0.9
84,619 - +0.3
84,619 - +1.0
84,619 - +0.0
84,619 - +0.0
84,718 - -2.4
84,718 - +0.4
84,837 + +0.4
84,837 + -0.4
84,838 - ABZR87_RS16650 0.10 -0.1
84,918 + ABZR87_RS16650 0.17 -0.1
84,918 + ABZR87_RS16650 0.17 -0.7
84,918 + ABZR87_RS16650 0.17 +0.4
84,918 + ABZR87_RS16650 0.17 +1.2
84,919 - ABZR87_RS16650 0.17 +0.4
84,919 - ABZR87_RS16650 0.17 +0.3
84,919 - ABZR87_RS16650 0.17 +0.4
84,959 + ABZR87_RS16650 0.20 -1.5
84,959 + ABZR87_RS16650 0.20 -0.5
84,960 - ABZR87_RS16650 0.20 -0.2
84,960 - ABZR87_RS16650 0.20 -1.2
85,174 + ABZR87_RS16650 0.38 -0.4
85,174 + ABZR87_RS16650 0.38 -0.1
85,182 - ABZR87_RS16650 0.38 -0.4
85,182 - ABZR87_RS16650 0.38 +0.7
85,182 - ABZR87_RS16650 0.38 -0.6
85,187 + ABZR87_RS16650 0.39 -2.5
85,187 + ABZR87_RS16650 0.39 +0.4
85,187 + ABZR87_RS16650 0.39 -0.3
85,187 + ABZR87_RS16650 0.39 -1.4
85,187 + ABZR87_RS16650 0.39 -0.1
85,187 + ABZR87_RS16650 0.39 -1.1
85,187 + ABZR87_RS16650 0.39 -0.2
85,188 - ABZR87_RS16650 0.39 +0.2
85,188 - ABZR87_RS16650 0.39 -0.2
85,188 - ABZR87_RS16650 0.39 +1.2
85,188 - ABZR87_RS16650 0.39 -0.7
85,188 - ABZR87_RS16650 0.39 -2.0
85,188 - ABZR87_RS16650 0.39 -2.0
85,188 - ABZR87_RS16650 0.39 +1.1
85,188 - ABZR87_RS16650 0.39 -1.7
85,308 + ABZR87_RS16650 0.49 -0.3
85,308 + ABZR87_RS16650 0.49 +0.6
85,309 - ABZR87_RS16650 0.49 -0.4
85,309 - ABZR87_RS16650 0.49 +2.2

Or see this region's nucleotide sequence