Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14575

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14565 and ABZR87_RS14570 are separated by 10 nucleotidesABZR87_RS14570 and ABZR87_RS14575 are separated by 270 nucleotidesABZR87_RS14575 and ABZR87_RS14580 are separated by 352 nucleotides ABZR87_RS14565: ABZR87_RS14565 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 3,077,421 to 3,077,786 _RS14565 ABZR87_RS14570: ABZR87_RS14570 - succinate dehydrogenase, cytochrome b556 subunit, at 3,077,797 to 3,078,207 _RS14570 ABZR87_RS14575: ABZR87_RS14575 - GntR family transcriptional regulator, at 3,078,478 to 3,079,287 _RS14575 ABZR87_RS14580: ABZR87_RS14580 - malate dehydrogenase, at 3,079,640 to 3,080,626 _RS14580 Position (kb) 3078 3079 3080Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3078.298 kb on - strandat 3078.378 kb on + strandat 3078.379 kb on - strandat 3078.379 kb on - strandat 3078.379 kb on - strandat 3078.498 kb on - strandat 3078.500 kb on + strandat 3078.500 kb on + strandat 3078.501 kb on - strandat 3078.501 kb on - strandat 3078.518 kb on + strandat 3078.518 kb on + strandat 3078.519 kb on - strandat 3078.519 kb on - strandat 3078.519 kb on - strandat 3078.532 kb on + strandat 3078.533 kb on - strandat 3078.533 kb on - strandat 3078.610 kb on + strand, within ABZR87_RS14575at 3078.610 kb on + strand, within ABZR87_RS14575at 3078.610 kb on + strand, within ABZR87_RS14575at 3078.610 kb on + strand, within ABZR87_RS14575at 3078.611 kb on - strand, within ABZR87_RS14575at 3078.621 kb on + strand, within ABZR87_RS14575at 3078.622 kb on - strand, within ABZR87_RS14575at 3078.702 kb on - strand, within ABZR87_RS14575at 3078.702 kb on - strand, within ABZR87_RS14575at 3078.702 kb on - strand, within ABZR87_RS14575at 3078.898 kb on + strand, within ABZR87_RS14575at 3078.898 kb on + strand, within ABZR87_RS14575at 3078.899 kb on - strand, within ABZR87_RS14575at 3078.915 kb on - strand, within ABZR87_RS14575at 3079.076 kb on + strand, within ABZR87_RS14575at 3079.076 kb on + strand, within ABZR87_RS14575at 3079.076 kb on + strand, within ABZR87_RS14575at 3079.077 kb on - strand, within ABZR87_RS14575at 3079.264 kb on + strandat 3079.264 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.287 kb on + strandat 3079.288 kb on - strandat 3079.288 kb on - strandat 3079.288 kb on - strandat 3079.288 kb on - strandat 3079.288 kb on - strandat 3079.335 kb on + strandat 3079.354 kb on + strandat 3079.355 kb on - strandat 3079.397 kb on - strandat 3079.397 kb on - strandat 3079.492 kb on + strandat 3079.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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3,078,298 - -0.2
3,078,378 + -0.3
3,078,379 - +0.3
3,078,379 - -0.6
3,078,379 - -2.2
3,078,498 - -0.7
3,078,500 + +1.6
3,078,500 + +2.9
3,078,501 - +0.2
3,078,501 - +0.9
3,078,518 + +1.3
3,078,518 + -0.3
3,078,519 - -2.4
3,078,519 - -0.3
3,078,519 - -0.9
3,078,532 + -0.7
3,078,533 - -0.2
3,078,533 - -0.3
3,078,610 + ABZR87_RS14575 0.16 -0.5
3,078,610 + ABZR87_RS14575 0.16 +1.9
3,078,610 + ABZR87_RS14575 0.16 +0.3
3,078,610 + ABZR87_RS14575 0.16 -2.2
3,078,611 - ABZR87_RS14575 0.16 -1.6
3,078,621 + ABZR87_RS14575 0.18 +0.5
3,078,622 - ABZR87_RS14575 0.18 -3.2
3,078,702 - ABZR87_RS14575 0.28 -1.6
3,078,702 - ABZR87_RS14575 0.28 -1.3
3,078,702 - ABZR87_RS14575 0.28 -1.1
3,078,898 + ABZR87_RS14575 0.52 -0.1
3,078,898 + ABZR87_RS14575 0.52 -2.4
3,078,899 - ABZR87_RS14575 0.52 +1.3
3,078,915 - ABZR87_RS14575 0.54 -0.8
3,079,076 + ABZR87_RS14575 0.74 -1.9
3,079,076 + ABZR87_RS14575 0.74 -0.7
3,079,076 + ABZR87_RS14575 0.74 -2.5
3,079,077 - ABZR87_RS14575 0.74 -2.8
3,079,264 + -0.7
3,079,264 + +1.6
3,079,287 + -3.0
3,079,287 + -0.5
3,079,287 + -0.7
3,079,287 + -1.4
3,079,287 + -1.9
3,079,287 + -1.2
3,079,288 - -0.7
3,079,288 - +1.0
3,079,288 - +0.6
3,079,288 - -3.2
3,079,288 - +1.3
3,079,335 + -1.3
3,079,354 + +1.7
3,079,355 - -1.9
3,079,397 - -1.1
3,079,397 - +2.0
3,079,492 + -3.5
3,079,621 + -1.9

Or see this region's nucleotide sequence