Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12575

Experiment: Dodecandioic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS12570 and ABZR87_RS12575 are separated by 162 nucleotidesABZR87_RS12575 and ABZR87_RS12580 are separated by 58 nucleotidesABZR87_RS12580 and ABZR87_RS12585 are separated by 39 nucleotides ABZR87_RS12570: ABZR87_RS12570 - acyl-CoA dehydrogenase, at 2,659,790 to 2,661,658 _RS12570 ABZR87_RS12575: ABZR87_RS12575 - acetyl-CoA C-acyltransferase, at 2,661,821 to 2,662,999 _RS12575 ABZR87_RS12580: ABZR87_RS12580 - bifunctional nicotinamidase/pyrazinamidase, at 2,663,058 to 2,663,699 _RS12580 ABZR87_RS12585: ABZR87_RS12585 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 2,663,739 to 2,665,820 _RS12585 Position (kb) 2661 2662 2663Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2661.114 kb on + strand, within ABZR87_RS12570at 2661.209 kb on + strand, within ABZR87_RS12570at 2661.210 kb on - strand, within ABZR87_RS12570at 2661.210 kb on - strand, within ABZR87_RS12570at 2661.490 kb on + strandat 2661.491 kb on - strandat 2661.491 kb on - strandat 2661.571 kb on - strandat 2661.571 kb on - strandat 2661.613 kb on - strandat 2661.822 kb on + strandat 2661.823 kb on - strandat 2661.823 kb on - strandat 2661.823 kb on - strandat 2661.885 kb on + strandat 2661.885 kb on + strandat 2661.885 kb on + strandat 2661.885 kb on + strandat 2661.886 kb on - strandat 2661.886 kb on - strandat 2662.026 kb on + strand, within ABZR87_RS12575at 2662.027 kb on - strand, within ABZR87_RS12575at 2662.495 kb on - strand, within ABZR87_RS12575at 2662.781 kb on + strand, within ABZR87_RS12575at 2662.782 kb on - strand, within ABZR87_RS12575at 2662.782 kb on - strand, within ABZR87_RS12575at 2662.782 kb on - strand, within ABZR87_RS12575at 2662.782 kb on - strand, within ABZR87_RS12575at 2662.966 kb on + strandat 2662.966 kb on + strandat 2662.967 kb on - strandat 2663.015 kb on - strandat 2663.051 kb on + strandat 2663.051 kb on + strandat 2663.282 kb on - strand, within ABZR87_RS12580at 2663.332 kb on + strand, within ABZR87_RS12580at 2663.333 kb on - strand, within ABZR87_RS12580at 2663.354 kb on - strand, within ABZR87_RS12580at 2663.354 kb on - strand, within ABZR87_RS12580at 2663.354 kb on - strand, within ABZR87_RS12580at 2663.555 kb on + strand, within ABZR87_RS12580at 2663.555 kb on + strand, within ABZR87_RS12580at 2663.556 kb on - strand, within ABZR87_RS12580at 2663.556 kb on - strand, within ABZR87_RS12580at 2663.748 kb on - strandat 2663.812 kb on + strandat 2663.851 kb on + strandat 2663.852 kb on - strandat 2663.852 kb on - strandat 2663.872 kb on + strandat 2663.873 kb on - strandat 2663.920 kb on + strandat 2663.921 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
remove
2,661,114 + ABZR87_RS12570 0.71 -0.0
2,661,209 + ABZR87_RS12570 0.76 +1.0
2,661,210 - ABZR87_RS12570 0.76 +0.4
2,661,210 - ABZR87_RS12570 0.76 +0.5
2,661,490 + -0.3
2,661,491 - +0.9
2,661,491 - +0.5
2,661,571 - +1.3
2,661,571 - +0.5
2,661,613 - +1.7
2,661,822 + +1.3
2,661,823 - -1.7
2,661,823 - +0.1
2,661,823 - -0.7
2,661,885 + -4.0
2,661,885 + -3.0
2,661,885 + -2.7
2,661,885 + -2.6
2,661,886 - -3.3
2,661,886 - -3.6
2,662,026 + ABZR87_RS12575 0.17 -3.9
2,662,027 - ABZR87_RS12575 0.17 -3.7
2,662,495 - ABZR87_RS12575 0.57 -2.6
2,662,781 + ABZR87_RS12575 0.81 -4.3
2,662,782 - ABZR87_RS12575 0.82 -1.9
2,662,782 - ABZR87_RS12575 0.82 -3.1
2,662,782 - ABZR87_RS12575 0.82 -2.5
2,662,782 - ABZR87_RS12575 0.82 -3.0
2,662,966 + -1.9
2,662,966 + -3.3
2,662,967 - -2.2
2,663,015 - -2.1
2,663,051 + -2.5
2,663,051 + -3.7
2,663,282 - ABZR87_RS12580 0.35 -0.9
2,663,332 + ABZR87_RS12580 0.43 -3.9
2,663,333 - ABZR87_RS12580 0.43 -0.5
2,663,354 - ABZR87_RS12580 0.46 -0.8
2,663,354 - ABZR87_RS12580 0.46 -0.7
2,663,354 - ABZR87_RS12580 0.46 -0.3
2,663,555 + ABZR87_RS12580 0.77 -1.3
2,663,555 + ABZR87_RS12580 0.77 -5.1
2,663,556 - ABZR87_RS12580 0.78 -1.3
2,663,556 - ABZR87_RS12580 0.78 -1.9
2,663,748 - -1.7
2,663,812 + -3.4
2,663,851 + -2.7
2,663,852 - -4.2
2,663,852 - -4.4
2,663,872 + -4.5
2,663,873 - -5.2
2,663,920 + -4.7
2,663,921 - -2.2

Or see this region's nucleotide sequence