Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11735

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11730 and ABZR87_RS11735 are separated by 325 nucleotidesABZR87_RS11735 and ABZR87_RS11740 are separated by 320 nucleotides ABZR87_RS11730: ABZR87_RS11730 - M55 family metallopeptidase, at 2,487,403 to 2,488,218 _RS11730 ABZR87_RS11735: ABZR87_RS11735 - chitin-binding domain-containing protein, at 2,488,544 to 2,488,909 _RS11735 ABZR87_RS11740: ABZR87_RS11740 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 2,489,230 to 2,490,132 _RS11740 Position (kb) 2488 2489Strain fitness (log2 ratio) -2 -1 0 1 2at 2487.652 kb on + strand, within ABZR87_RS11730at 2487.707 kb on - strand, within ABZR87_RS11730at 2487.985 kb on + strand, within ABZR87_RS11730at 2487.986 kb on - strand, within ABZR87_RS11730at 2488.161 kb on - strandat 2488.161 kb on - strandat 2488.173 kb on - strandat 2488.173 kb on - strandat 2488.450 kb on + strandat 2488.507 kb on + strandat 2488.584 kb on + strand, within ABZR87_RS11735at 2489.231 kb on + strandat 2489.257 kb on + strandat 2489.495 kb on - strand, within ABZR87_RS11740at 2489.499 kb on - strand, within ABZR87_RS11740at 2489.525 kb on + strand, within ABZR87_RS11740at 2489.525 kb on + strand, within ABZR87_RS11740at 2489.525 kb on + strand, within ABZR87_RS11740at 2489.525 kb on + strand, within ABZR87_RS11740at 2489.526 kb on - strand, within ABZR87_RS11740at 2489.526 kb on - strand, within ABZR87_RS11740at 2489.526 kb on - strand, within ABZR87_RS11740at 2489.552 kb on + strand, within ABZR87_RS11740at 2489.552 kb on + strand, within ABZR87_RS11740at 2489.553 kb on - strand, within ABZR87_RS11740at 2489.720 kb on - strand, within ABZR87_RS11740at 2489.822 kb on + strand, within ABZR87_RS11740at 2489.822 kb on + strand, within ABZR87_RS11740at 2489.823 kb on - strand, within ABZR87_RS11740at 2489.861 kb on + strand, within ABZR87_RS11740at 2489.861 kb on + strand, within ABZR87_RS11740at 2489.862 kb on - strand, within ABZR87_RS11740at 2489.862 kb on - strand, within ABZR87_RS11740

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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2,487,652 + ABZR87_RS11730 0.31 -0.3
2,487,707 - ABZR87_RS11730 0.37 -1.8
2,487,985 + ABZR87_RS11730 0.71 -0.1
2,487,986 - ABZR87_RS11730 0.71 -1.2
2,488,161 - +0.5
2,488,161 - -0.2
2,488,173 - -0.2
2,488,173 - -0.3
2,488,450 + +0.6
2,488,507 + +0.9
2,488,584 + ABZR87_RS11735 0.11 +1.2
2,489,231 + -0.0
2,489,257 + -0.8
2,489,495 - ABZR87_RS11740 0.29 -0.1
2,489,499 - ABZR87_RS11740 0.30 +0.4
2,489,525 + ABZR87_RS11740 0.33 -0.6
2,489,525 + ABZR87_RS11740 0.33 -0.1
2,489,525 + ABZR87_RS11740 0.33 -0.3
2,489,525 + ABZR87_RS11740 0.33 +0.1
2,489,526 - ABZR87_RS11740 0.33 -2.2
2,489,526 - ABZR87_RS11740 0.33 +0.2
2,489,526 - ABZR87_RS11740 0.33 +1.4
2,489,552 + ABZR87_RS11740 0.36 +2.3
2,489,552 + ABZR87_RS11740 0.36 -0.0
2,489,553 - ABZR87_RS11740 0.36 +1.9
2,489,720 - ABZR87_RS11740 0.54 -0.9
2,489,822 + ABZR87_RS11740 0.66 +2.7
2,489,822 + ABZR87_RS11740 0.66 +1.1
2,489,823 - ABZR87_RS11740 0.66 -0.3
2,489,861 + ABZR87_RS11740 0.70 +0.5
2,489,861 + ABZR87_RS11740 0.70 -0.3
2,489,862 - ABZR87_RS11740 0.70 +1.2
2,489,862 - ABZR87_RS11740 0.70 +1.1

Or see this region's nucleotide sequence