Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09800

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09795 and ABZR87_RS09800 are separated by 12 nucleotidesABZR87_RS09800 and ABZR87_RS09805 overlap by 4 nucleotides ABZR87_RS09795: ABZR87_RS09795 - efflux RND transporter permease subunit, at 2,080,012 to 2,083,167 _RS09795 ABZR87_RS09800: ABZR87_RS09800 - alpha/beta fold hydrolase, at 2,083,180 to 2,084,004 _RS09800 ABZR87_RS09805: ABZR87_RS09805 - MASE1 domain-containing protein, at 2,084,001 to 2,085,287 _RS09805 Position (kb) 2083 2084 2085Strain fitness (log2 ratio) -3 -2 -1 0 1at 2082.274 kb on + strand, within ABZR87_RS09795at 2082.457 kb on + strand, within ABZR87_RS09795at 2082.571 kb on + strand, within ABZR87_RS09795at 2082.778 kb on + strand, within ABZR87_RS09795at 2082.778 kb on + strand, within ABZR87_RS09795at 2082.779 kb on - strand, within ABZR87_RS09795at 2082.779 kb on - strand, within ABZR87_RS09795at 2083.203 kb on + strandat 2083.204 kb on - strandat 2083.605 kb on - strand, within ABZR87_RS09800at 2083.613 kb on + strand, within ABZR87_RS09800at 2083.613 kb on + strand, within ABZR87_RS09800at 2083.765 kb on - strand, within ABZR87_RS09800at 2083.799 kb on + strand, within ABZR87_RS09800at 2083.799 kb on + strand, within ABZR87_RS09800at 2083.799 kb on + strand, within ABZR87_RS09800at 2083.800 kb on - strand, within ABZR87_RS09800at 2083.800 kb on - strand, within ABZR87_RS09800at 2083.941 kb on - strandat 2084.226 kb on + strand, within ABZR87_RS09805at 2084.226 kb on + strand, within ABZR87_RS09805at 2084.323 kb on + strand, within ABZR87_RS09805at 2084.324 kb on - strand, within ABZR87_RS09805at 2084.324 kb on - strand, within ABZR87_RS09805at 2084.455 kb on + strand, within ABZR87_RS09805at 2084.456 kb on - strand, within ABZR87_RS09805at 2084.456 kb on - strand, within ABZR87_RS09805at 2084.456 kb on - strand, within ABZR87_RS09805at 2084.485 kb on + strand, within ABZR87_RS09805at 2084.485 kb on + strand, within ABZR87_RS09805at 2084.485 kb on + strand, within ABZR87_RS09805at 2084.486 kb on - strand, within ABZR87_RS09805at 2084.626 kb on + strand, within ABZR87_RS09805at 2084.627 kb on - strand, within ABZR87_RS09805at 2084.627 kb on - strand, within ABZR87_RS09805at 2084.689 kb on + strand, within ABZR87_RS09805at 2084.689 kb on + strand, within ABZR87_RS09805at 2084.689 kb on + strand, within ABZR87_RS09805at 2084.690 kb on - strand, within ABZR87_RS09805at 2084.690 kb on - strand, within ABZR87_RS09805at 2084.690 kb on - strand, within ABZR87_RS09805at 2084.690 kb on - strand, within ABZR87_RS09805at 2084.953 kb on + strand, within ABZR87_RS09805at 2084.953 kb on + strand, within ABZR87_RS09805at 2084.953 kb on + strand, within ABZR87_RS09805at 2084.954 kb on - strand, within ABZR87_RS09805at 2084.954 kb on - strand, within ABZR87_RS09805at 2084.954 kb on - strand, within ABZR87_RS09805at 2084.954 kb on - strand, within ABZR87_RS09805

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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2,082,274 + ABZR87_RS09795 0.72 -0.0
2,082,457 + ABZR87_RS09795 0.77 -0.3
2,082,571 + ABZR87_RS09795 0.81 +1.7
2,082,778 + ABZR87_RS09795 0.88 +0.1
2,082,778 + ABZR87_RS09795 0.88 +0.6
2,082,779 - ABZR87_RS09795 0.88 +0.8
2,082,779 - ABZR87_RS09795 0.88 -0.1
2,083,203 + +1.4
2,083,204 - -1.0
2,083,605 - ABZR87_RS09800 0.52 -0.6
2,083,613 + ABZR87_RS09800 0.52 -1.9
2,083,613 + ABZR87_RS09800 0.52 -1.0
2,083,765 - ABZR87_RS09800 0.71 +1.3
2,083,799 + ABZR87_RS09800 0.75 +0.8
2,083,799 + ABZR87_RS09800 0.75 +0.1
2,083,799 + ABZR87_RS09800 0.75 +1.0
2,083,800 - ABZR87_RS09800 0.75 +1.1
2,083,800 - ABZR87_RS09800 0.75 +1.4
2,083,941 - +0.7
2,084,226 + ABZR87_RS09805 0.17 -1.3
2,084,226 + ABZR87_RS09805 0.17 -0.8
2,084,323 + ABZR87_RS09805 0.25 -0.4
2,084,324 - ABZR87_RS09805 0.25 -1.3
2,084,324 - ABZR87_RS09805 0.25 -1.6
2,084,455 + ABZR87_RS09805 0.35 +0.9
2,084,456 - ABZR87_RS09805 0.35 -3.0
2,084,456 - ABZR87_RS09805 0.35 +0.3
2,084,456 - ABZR87_RS09805 0.35 -1.5
2,084,485 + ABZR87_RS09805 0.38 +0.5
2,084,485 + ABZR87_RS09805 0.38 +0.1
2,084,485 + ABZR87_RS09805 0.38 +0.7
2,084,486 - ABZR87_RS09805 0.38 -3.5
2,084,626 + ABZR87_RS09805 0.49 +0.5
2,084,627 - ABZR87_RS09805 0.49 -2.2
2,084,627 - ABZR87_RS09805 0.49 +0.2
2,084,689 + ABZR87_RS09805 0.53 -0.0
2,084,689 + ABZR87_RS09805 0.53 -0.5
2,084,689 + ABZR87_RS09805 0.53 -1.3
2,084,690 - ABZR87_RS09805 0.54 -0.7
2,084,690 - ABZR87_RS09805 0.54 -3.0
2,084,690 - ABZR87_RS09805 0.54 +0.3
2,084,690 - ABZR87_RS09805 0.54 -2.2
2,084,953 + ABZR87_RS09805 0.74 -1.1
2,084,953 + ABZR87_RS09805 0.74 -1.1
2,084,953 + ABZR87_RS09805 0.74 +0.1
2,084,954 - ABZR87_RS09805 0.74 -3.2
2,084,954 - ABZR87_RS09805 0.74 +0.9
2,084,954 - ABZR87_RS09805 0.74 -2.2
2,084,954 - ABZR87_RS09805 0.74 -0.8

Or see this region's nucleotide sequence