Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09375

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09370 and ABZR87_RS09375 are separated by 190 nucleotidesABZR87_RS09375 and ABZR87_RS09380 are separated by 374 nucleotides ABZR87_RS09370: ABZR87_RS09370 - ExeM/NucH family extracellular endonuclease, at 1,983,441 to 1,985,897 _RS09370 ABZR87_RS09375: ABZR87_RS09375 - ATP-binding protein, at 1,986,088 to 1,988,544 _RS09375 ABZR87_RS09380: ABZR87_RS09380 - fimbrial protein, at 1,988,919 to 1,989,473 _RS09380 Position (kb) 1986 1987 1988 1989Strain fitness (log2 ratio) -2 -1 0 1 2at 1985.115 kb on + strand, within ABZR87_RS09370at 1985.116 kb on - strand, within ABZR87_RS09370at 1985.116 kb on - strand, within ABZR87_RS09370at 1985.421 kb on + strand, within ABZR87_RS09370at 1985.421 kb on + strand, within ABZR87_RS09370at 1985.421 kb on + strand, within ABZR87_RS09370at 1985.421 kb on + strand, within ABZR87_RS09370at 1985.422 kb on - strand, within ABZR87_RS09370at 1985.422 kb on - strand, within ABZR87_RS09370at 1985.422 kb on - strand, within ABZR87_RS09370at 1985.422 kb on - strand, within ABZR87_RS09370at 1985.463 kb on + strand, within ABZR87_RS09370at 1985.502 kb on + strand, within ABZR87_RS09370at 1985.502 kb on + strand, within ABZR87_RS09370at 1985.502 kb on + strand, within ABZR87_RS09370at 1985.502 kb on + strand, within ABZR87_RS09370at 1985.502 kb on + strand, within ABZR87_RS09370at 1985.503 kb on - strand, within ABZR87_RS09370at 1985.503 kb on - strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.508 kb on + strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.509 kb on - strand, within ABZR87_RS09370at 1985.532 kb on + strand, within ABZR87_RS09370at 1985.597 kb on + strand, within ABZR87_RS09370at 1985.598 kb on - strand, within ABZR87_RS09370at 1985.598 kb on - strand, within ABZR87_RS09370at 1985.628 kb on + strand, within ABZR87_RS09370at 1985.629 kb on - strand, within ABZR87_RS09370at 1985.640 kb on + strand, within ABZR87_RS09370at 1985.640 kb on + strand, within ABZR87_RS09370at 1985.640 kb on + strand, within ABZR87_RS09370at 1985.640 kb on + strand, within ABZR87_RS09370at 1985.640 kb on + strand, within ABZR87_RS09370at 1985.641 kb on - strand, within ABZR87_RS09370at 1985.641 kb on - strand, within ABZR87_RS09370at 1985.670 kb on + strandat 1985.670 kb on + strandat 1985.671 kb on - strandat 1986.022 kb on + strandat 1986.022 kb on + strandat 1986.022 kb on + strandat 1986.022 kb on + strandat 1986.023 kb on - strandat 1986.023 kb on - strandat 1986.023 kb on - strandat 1986.023 kb on - strandat 1986.116 kb on + strandat 1986.149 kb on + strandat 1986.197 kb on + strandat 1986.197 kb on + strandat 1986.198 kb on - strandat 1986.199 kb on + strandat 1986.200 kb on - strandat 1986.200 kb on - strandat 1986.200 kb on - strandat 1986.200 kb on - strandat 1986.200 kb on - strandat 1986.246 kb on + strandat 1986.247 kb on - strandat 1986.299 kb on + strandat 1986.362 kb on - strand, within ABZR87_RS09375at 1986.461 kb on - strand, within ABZR87_RS09375at 1986.483 kb on + strand, within ABZR87_RS09375at 1986.490 kb on + strand, within ABZR87_RS09375at 1986.490 kb on + strand, within ABZR87_RS09375at 1986.490 kb on + strand, within ABZR87_RS09375at 1986.490 kb on + strand, within ABZR87_RS09375at 1986.491 kb on - strand, within ABZR87_RS09375at 1986.493 kb on + strand, within ABZR87_RS09375at 1986.493 kb on + strand, within ABZR87_RS09375at 1986.493 kb on + strand, within ABZR87_RS09375at 1986.493 kb on + strand, within ABZR87_RS09375at 1986.494 kb on - strand, within ABZR87_RS09375at 1986.494 kb on - strand, within ABZR87_RS09375at 1986.494 kb on - strand, within ABZR87_RS09375at 1986.494 kb on - strand, within ABZR87_RS09375at 1986.537 kb on - strand, within ABZR87_RS09375at 1986.537 kb on - strand, within ABZR87_RS09375at 1986.624 kb on - strand, within ABZR87_RS09375at 1986.786 kb on + strand, within ABZR87_RS09375at 1986.787 kb on + strand, within ABZR87_RS09375at 1986.788 kb on - strand, within ABZR87_RS09375at 1986.824 kb on + strand, within ABZR87_RS09375at 1986.946 kb on + strand, within ABZR87_RS09375at 1986.946 kb on + strand, within ABZR87_RS09375at 1987.006 kb on + strand, within ABZR87_RS09375at 1987.007 kb on - strand, within ABZR87_RS09375at 1987.007 kb on - strand, within ABZR87_RS09375at 1987.007 kb on - strand, within ABZR87_RS09375at 1987.007 kb on - strand, within ABZR87_RS09375at 1987.007 kb on - strand, within ABZR87_RS09375at 1987.007 kb on - strand, within ABZR87_RS09375at 1987.007 kb on - strand, within ABZR87_RS09375at 1987.013 kb on + strand, within ABZR87_RS09375at 1987.013 kb on + strand, within ABZR87_RS09375at 1987.014 kb on - strand, within ABZR87_RS09375at 1987.229 kb on - strand, within ABZR87_RS09375at 1987.229 kb on - strand, within ABZR87_RS09375at 1987.229 kb on - strand, within ABZR87_RS09375at 1987.229 kb on - strand, within ABZR87_RS09375at 1987.229 kb on - strand, within ABZR87_RS09375at 1987.480 kb on + strand, within ABZR87_RS09375at 1987.481 kb on - strand, within ABZR87_RS09375at 1987.481 kb on - strand, within ABZR87_RS09375at 1987.518 kb on - strand, within ABZR87_RS09375at 1987.518 kb on - strand, within ABZR87_RS09375at 1987.527 kb on - strand, within ABZR87_RS09375at 1987.582 kb on + strand, within ABZR87_RS09375at 1987.583 kb on - strand, within ABZR87_RS09375at 1987.583 kb on - strand, within ABZR87_RS09375at 1988.032 kb on + strand, within ABZR87_RS09375at 1988.032 kb on + strand, within ABZR87_RS09375at 1988.032 kb on + strand, within ABZR87_RS09375at 1988.032 kb on + strand, within ABZR87_RS09375at 1988.033 kb on - strand, within ABZR87_RS09375at 1988.034 kb on + strand, within ABZR87_RS09375at 1988.035 kb on - strand, within ABZR87_RS09375at 1988.035 kb on - strand, within ABZR87_RS09375at 1988.035 kb on - strand, within ABZR87_RS09375at 1988.177 kb on + strand, within ABZR87_RS09375at 1988.177 kb on + strand, within ABZR87_RS09375at 1988.178 kb on - strand, within ABZR87_RS09375at 1988.178 kb on - strand, within ABZR87_RS09375at 1988.178 kb on - strand, within ABZR87_RS09375at 1988.178 kb on - strand, within ABZR87_RS09375at 1988.178 kb on - strand, within ABZR87_RS09375at 1988.178 kb on - strand, within ABZR87_RS09375at 1988.293 kb on + strand, within ABZR87_RS09375at 1988.293 kb on + strand, within ABZR87_RS09375at 1988.294 kb on - strand, within ABZR87_RS09375at 1988.294 kb on - strand, within ABZR87_RS09375at 1988.343 kb on + strandat 1988.419 kb on - strandat 1988.530 kb on - strandat 1988.530 kb on - strandat 1988.669 kb on + strandat 1988.775 kb on + strandat 1988.775 kb on + strandat 1988.775 kb on + strandat 1988.776 kb on - strandat 1988.801 kb on - strandat 1988.801 kb on - strandat 1988.873 kb on + strandat 1988.873 kb on + strandat 1988.874 kb on - strandat 1988.880 kb on - strandat 1988.880 kb on - strandat 1989.089 kb on + strand, within ABZR87_RS09380at 1989.090 kb on - strand, within ABZR87_RS09380at 1989.283 kb on - strand, within ABZR87_RS09380at 1989.283 kb on - strand, within ABZR87_RS09380at 1989.291 kb on - strand, within ABZR87_RS09380at 1989.396 kb on + strand, within ABZR87_RS09380at 1989.396 kb on + strand, within ABZR87_RS09380at 1989.396 kb on + strand, within ABZR87_RS09380at 1989.396 kb on + strand, within ABZR87_RS09380at 1989.397 kb on - strand, within ABZR87_RS09380at 1989.397 kb on - strand, within ABZR87_RS09380at 1989.397 kb on - strand, within ABZR87_RS09380at 1989.397 kb on - strand, within ABZR87_RS09380at 1989.397 kb on - strand, within ABZR87_RS09380at 1989.397 kb on - strand, within ABZR87_RS09380at 1989.465 kb on + strandat 1989.465 kb on + strandat 1989.465 kb on + strandat 1989.466 kb on - strandat 1989.466 kb on - strandat 1989.471 kb on + strandat 1989.472 kb on - strandat 1989.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,985,115 + ABZR87_RS09370 0.68 -0.1
1,985,116 - ABZR87_RS09370 0.68 +0.5
1,985,116 - ABZR87_RS09370 0.68 -0.3
1,985,421 + ABZR87_RS09370 0.81 +0.4
1,985,421 + ABZR87_RS09370 0.81 +1.6
1,985,421 + ABZR87_RS09370 0.81 +1.0
1,985,421 + ABZR87_RS09370 0.81 -1.1
1,985,422 - ABZR87_RS09370 0.81 +0.6
1,985,422 - ABZR87_RS09370 0.81 -0.9
1,985,422 - ABZR87_RS09370 0.81 +0.4
1,985,422 - ABZR87_RS09370 0.81 +1.1
1,985,463 + ABZR87_RS09370 0.82 -0.0
1,985,502 + ABZR87_RS09370 0.84 -1.0
1,985,502 + ABZR87_RS09370 0.84 +0.6
1,985,502 + ABZR87_RS09370 0.84 -0.0
1,985,502 + ABZR87_RS09370 0.84 -0.0
1,985,502 + ABZR87_RS09370 0.84 -0.2
1,985,503 - ABZR87_RS09370 0.84 +0.7
1,985,503 - ABZR87_RS09370 0.84 -0.4
1,985,508 + ABZR87_RS09370 0.84 -0.2
1,985,508 + ABZR87_RS09370 0.84 +0.2
1,985,508 + ABZR87_RS09370 0.84 -0.0
1,985,508 + ABZR87_RS09370 0.84 -0.8
1,985,508 + ABZR87_RS09370 0.84 +0.8
1,985,508 + ABZR87_RS09370 0.84 -0.7
1,985,508 + ABZR87_RS09370 0.84 -0.2
1,985,508 + ABZR87_RS09370 0.84 +0.1
1,985,508 + ABZR87_RS09370 0.84 -0.1
1,985,508 + ABZR87_RS09370 0.84 +0.1
1,985,509 - ABZR87_RS09370 0.84 -0.2
1,985,509 - ABZR87_RS09370 0.84 +1.1
1,985,509 - ABZR87_RS09370 0.84 +1.8
1,985,509 - ABZR87_RS09370 0.84 +0.8
1,985,509 - ABZR87_RS09370 0.84 +0.3
1,985,509 - ABZR87_RS09370 0.84 +0.3
1,985,509 - ABZR87_RS09370 0.84 -2.2
1,985,509 - ABZR87_RS09370 0.84 +0.2
1,985,509 - ABZR87_RS09370 0.84 -1.2
1,985,509 - ABZR87_RS09370 0.84 -2.0
1,985,509 - ABZR87_RS09370 0.84 +0.4
1,985,509 - ABZR87_RS09370 0.84 +0.0
1,985,532 + ABZR87_RS09370 0.85 -0.5
1,985,597 + ABZR87_RS09370 0.88 -2.0
1,985,598 - ABZR87_RS09370 0.88 -0.6
1,985,598 - ABZR87_RS09370 0.88 -0.6
1,985,628 + ABZR87_RS09370 0.89 -0.4
1,985,629 - ABZR87_RS09370 0.89 -0.8
1,985,640 + ABZR87_RS09370 0.89 +0.3
1,985,640 + ABZR87_RS09370 0.89 +0.4
1,985,640 + ABZR87_RS09370 0.89 +0.5
1,985,640 + ABZR87_RS09370 0.89 -0.3
1,985,640 + ABZR87_RS09370 0.89 +2.3
1,985,641 - ABZR87_RS09370 0.90 +1.5
1,985,641 - ABZR87_RS09370 0.90 -0.9
1,985,670 + +0.9
1,985,670 + +1.1
1,985,671 - +1.0
1,986,022 + +0.3
1,986,022 + +0.2
1,986,022 + -0.8
1,986,022 + -0.6
1,986,023 - +1.9
1,986,023 - -0.2
1,986,023 - +0.5
1,986,023 - -1.0
1,986,116 + -0.9
1,986,149 + -0.6
1,986,197 + +0.1
1,986,197 + +1.1
1,986,198 - -0.5
1,986,199 + +0.9
1,986,200 - -1.5
1,986,200 - +0.3
1,986,200 - +0.9
1,986,200 - +0.3
1,986,200 - +2.1
1,986,246 + +0.0
1,986,247 - +0.9
1,986,299 + +0.8
1,986,362 - ABZR87_RS09375 0.11 +0.1
1,986,461 - ABZR87_RS09375 0.15 +0.2
1,986,483 + ABZR87_RS09375 0.16 -0.4
1,986,490 + ABZR87_RS09375 0.16 +0.4
1,986,490 + ABZR87_RS09375 0.16 -0.5
1,986,490 + ABZR87_RS09375 0.16 +0.2
1,986,490 + ABZR87_RS09375 0.16 +0.0
1,986,491 - ABZR87_RS09375 0.16 +1.0
1,986,493 + ABZR87_RS09375 0.16 -0.4
1,986,493 + ABZR87_RS09375 0.16 -1.7
1,986,493 + ABZR87_RS09375 0.16 +0.5
1,986,493 + ABZR87_RS09375 0.16 -1.1
1,986,494 - ABZR87_RS09375 0.17 -0.6
1,986,494 - ABZR87_RS09375 0.17 -0.6
1,986,494 - ABZR87_RS09375 0.17 -0.7
1,986,494 - ABZR87_RS09375 0.17 -0.4
1,986,537 - ABZR87_RS09375 0.18 -0.0
1,986,537 - ABZR87_RS09375 0.18 -0.4
1,986,624 - ABZR87_RS09375 0.22 +0.6
1,986,786 + ABZR87_RS09375 0.28 +0.1
1,986,787 + ABZR87_RS09375 0.28 +0.4
1,986,788 - ABZR87_RS09375 0.28 -0.2
1,986,824 + ABZR87_RS09375 0.30 +0.5
1,986,946 + ABZR87_RS09375 0.35 -1.2
1,986,946 + ABZR87_RS09375 0.35 -1.0
1,987,006 + ABZR87_RS09375 0.37 -1.2
1,987,007 - ABZR87_RS09375 0.37 +0.1
1,987,007 - ABZR87_RS09375 0.37 -2.2
1,987,007 - ABZR87_RS09375 0.37 +0.8
1,987,007 - ABZR87_RS09375 0.37 -0.3
1,987,007 - ABZR87_RS09375 0.37 -1.4
1,987,007 - ABZR87_RS09375 0.37 +0.8
1,987,007 - ABZR87_RS09375 0.37 -0.5
1,987,013 + ABZR87_RS09375 0.38 +2.0
1,987,013 + ABZR87_RS09375 0.38 -0.8
1,987,014 - ABZR87_RS09375 0.38 -0.3
1,987,229 - ABZR87_RS09375 0.46 -0.1
1,987,229 - ABZR87_RS09375 0.46 +0.4
1,987,229 - ABZR87_RS09375 0.46 +1.3
1,987,229 - ABZR87_RS09375 0.46 -0.3
1,987,229 - ABZR87_RS09375 0.46 +0.3
1,987,480 + ABZR87_RS09375 0.57 +0.2
1,987,481 - ABZR87_RS09375 0.57 -1.7
1,987,481 - ABZR87_RS09375 0.57 -0.1
1,987,518 - ABZR87_RS09375 0.58 +1.5
1,987,518 - ABZR87_RS09375 0.58 +1.3
1,987,527 - ABZR87_RS09375 0.59 -0.1
1,987,582 + ABZR87_RS09375 0.61 -0.9
1,987,583 - ABZR87_RS09375 0.61 -1.3
1,987,583 - ABZR87_RS09375 0.61 -0.1
1,988,032 + ABZR87_RS09375 0.79 -1.3
1,988,032 + ABZR87_RS09375 0.79 +0.6
1,988,032 + ABZR87_RS09375 0.79 -0.1
1,988,032 + ABZR87_RS09375 0.79 -1.1
1,988,033 - ABZR87_RS09375 0.79 -0.3
1,988,034 + ABZR87_RS09375 0.79 +0.8
1,988,035 - ABZR87_RS09375 0.79 -0.9
1,988,035 - ABZR87_RS09375 0.79 +0.3
1,988,035 - ABZR87_RS09375 0.79 -0.7
1,988,177 + ABZR87_RS09375 0.85 -0.6
1,988,177 + ABZR87_RS09375 0.85 -0.8
1,988,178 - ABZR87_RS09375 0.85 -1.1
1,988,178 - ABZR87_RS09375 0.85 -0.2
1,988,178 - ABZR87_RS09375 0.85 +1.3
1,988,178 - ABZR87_RS09375 0.85 +0.7
1,988,178 - ABZR87_RS09375 0.85 +0.6
1,988,178 - ABZR87_RS09375 0.85 +1.1
1,988,293 + ABZR87_RS09375 0.90 -0.5
1,988,293 + ABZR87_RS09375 0.90 +1.4
1,988,294 - ABZR87_RS09375 0.90 +0.9
1,988,294 - ABZR87_RS09375 0.90 -0.8
1,988,343 + -0.6
1,988,419 - +0.8
1,988,530 - +0.5
1,988,530 - +0.8
1,988,669 + +0.5
1,988,775 + +1.5
1,988,775 + +0.8
1,988,775 + +0.8
1,988,776 - -0.2
1,988,801 - +0.9
1,988,801 - -1.4
1,988,873 + +1.1
1,988,873 + +0.6
1,988,874 - +1.0
1,988,880 - +0.4
1,988,880 - +2.0
1,989,089 + ABZR87_RS09380 0.31 +0.0
1,989,090 - ABZR87_RS09380 0.31 +0.7
1,989,283 - ABZR87_RS09380 0.66 -0.6
1,989,283 - ABZR87_RS09380 0.66 -0.1
1,989,291 - ABZR87_RS09380 0.67 -1.3
1,989,396 + ABZR87_RS09380 0.86 +1.1
1,989,396 + ABZR87_RS09380 0.86 +0.0
1,989,396 + ABZR87_RS09380 0.86 +0.2
1,989,396 + ABZR87_RS09380 0.86 -0.3
1,989,397 - ABZR87_RS09380 0.86 +0.1
1,989,397 - ABZR87_RS09380 0.86 +0.8
1,989,397 - ABZR87_RS09380 0.86 -0.1
1,989,397 - ABZR87_RS09380 0.86 -0.7
1,989,397 - ABZR87_RS09380 0.86 -0.6
1,989,397 - ABZR87_RS09380 0.86 +0.5
1,989,465 + +0.0
1,989,465 + -1.5
1,989,465 + -0.7
1,989,466 - +0.3
1,989,466 - -0.6
1,989,471 + +0.7
1,989,472 - -0.7
1,989,472 - -1.1

Or see this region's nucleotide sequence