Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09030

Experiment: Dodecandioic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS09025 and ABZR87_RS09030 are separated by 4 nucleotidesABZR87_RS09030 and ABZR87_RS09035 are separated by 79 nucleotides ABZR87_RS09025: ABZR87_RS09025 - MFS transporter, at 1,913,265 to 1,914,545 _RS09025 ABZR87_RS09030: ABZR87_RS09030 - NAD(P)-dependent oxidoreductase, at 1,914,550 to 1,915,524 _RS09030 ABZR87_RS09035: ABZR87_RS09035 - LacI family DNA-binding transcriptional regulator, at 1,915,604 to 1,916,668 _RS09035 Position (kb) 1914 1915 1916Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1913.654 kb on + strand, within ABZR87_RS09025at 1913.682 kb on - strand, within ABZR87_RS09025at 1913.768 kb on + strand, within ABZR87_RS09025at 1913.768 kb on + strand, within ABZR87_RS09025at 1913.768 kb on + strand, within ABZR87_RS09025at 1913.768 kb on + strand, within ABZR87_RS09025at 1913.768 kb on + strand, within ABZR87_RS09025at 1913.769 kb on - strand, within ABZR87_RS09025at 1913.769 kb on - strand, within ABZR87_RS09025at 1913.769 kb on - strand, within ABZR87_RS09025at 1913.769 kb on - strand, within ABZR87_RS09025at 1913.769 kb on - strand, within ABZR87_RS09025at 1913.769 kb on - strand, within ABZR87_RS09025at 1913.932 kb on - strand, within ABZR87_RS09025at 1913.979 kb on + strand, within ABZR87_RS09025at 1913.979 kb on + strand, within ABZR87_RS09025at 1913.979 kb on + strand, within ABZR87_RS09025at 1913.980 kb on - strand, within ABZR87_RS09025at 1913.980 kb on - strand, within ABZR87_RS09025at 1914.003 kb on + strand, within ABZR87_RS09025at 1914.003 kb on + strand, within ABZR87_RS09025at 1914.004 kb on - strand, within ABZR87_RS09025at 1914.090 kb on + strand, within ABZR87_RS09025at 1914.090 kb on + strand, within ABZR87_RS09025at 1914.091 kb on - strand, within ABZR87_RS09025at 1914.091 kb on - strand, within ABZR87_RS09025at 1914.240 kb on + strand, within ABZR87_RS09025at 1914.240 kb on + strand, within ABZR87_RS09025at 1914.240 kb on + strand, within ABZR87_RS09025at 1914.240 kb on + strand, within ABZR87_RS09025at 1914.241 kb on - strand, within ABZR87_RS09025at 1914.241 kb on - strand, within ABZR87_RS09025at 1914.241 kb on - strand, within ABZR87_RS09025at 1914.241 kb on - strand, within ABZR87_RS09025at 1914.241 kb on - strand, within ABZR87_RS09025at 1914.241 kb on - strand, within ABZR87_RS09025at 1914.241 kb on - strand, within ABZR87_RS09025at 1914.241 kb on - strand, within ABZR87_RS09025at 1914.273 kb on + strand, within ABZR87_RS09025at 1914.273 kb on + strand, within ABZR87_RS09025at 1914.273 kb on + strand, within ABZR87_RS09025at 1914.273 kb on + strand, within ABZR87_RS09025at 1914.274 kb on - strand, within ABZR87_RS09025at 1914.274 kb on - strand, within ABZR87_RS09025at 1914.274 kb on - strand, within ABZR87_RS09025at 1914.274 kb on - strand, within ABZR87_RS09025at 1914.283 kb on - strand, within ABZR87_RS09025at 1914.283 kb on - strand, within ABZR87_RS09025at 1914.349 kb on + strand, within ABZR87_RS09025at 1914.350 kb on - strand, within ABZR87_RS09025at 1914.390 kb on + strand, within ABZR87_RS09025at 1914.390 kb on + strand, within ABZR87_RS09025at 1914.390 kb on + strand, within ABZR87_RS09025at 1914.402 kb on + strand, within ABZR87_RS09025at 1914.403 kb on - strand, within ABZR87_RS09025at 1914.439 kb on - strandat 1914.439 kb on - strandat 1914.439 kb on - strandat 1914.572 kb on - strandat 1914.572 kb on - strandat 1914.572 kb on - strandat 1914.764 kb on - strand, within ABZR87_RS09030at 1915.054 kb on + strand, within ABZR87_RS09030at 1915.054 kb on + strand, within ABZR87_RS09030at 1915.055 kb on - strand, within ABZR87_RS09030at 1915.055 kb on - strand, within ABZR87_RS09030at 1915.293 kb on + strand, within ABZR87_RS09030at 1915.293 kb on + strand, within ABZR87_RS09030at 1915.293 kb on + strand, within ABZR87_RS09030at 1915.467 kb on + strandat 1915.467 kb on + strandat 1915.546 kb on - strandat 1915.694 kb on + strandat 1915.853 kb on + strand, within ABZR87_RS09035at 1915.854 kb on - strand, within ABZR87_RS09035at 1915.904 kb on + strand, within ABZR87_RS09035at 1915.904 kb on + strand, within ABZR87_RS09035at 1915.904 kb on + strand, within ABZR87_RS09035at 1915.905 kb on - strand, within ABZR87_RS09035at 1916.079 kb on + strand, within ABZR87_RS09035at 1916.080 kb on - strand, within ABZR87_RS09035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
remove
1,913,654 + ABZR87_RS09025 0.30 +0.9
1,913,682 - ABZR87_RS09025 0.33 +0.8
1,913,768 + ABZR87_RS09025 0.39 -0.8
1,913,768 + ABZR87_RS09025 0.39 -0.3
1,913,768 + ABZR87_RS09025 0.39 -0.7
1,913,768 + ABZR87_RS09025 0.39 +0.4
1,913,768 + ABZR87_RS09025 0.39 -0.2
1,913,769 - ABZR87_RS09025 0.39 +0.3
1,913,769 - ABZR87_RS09025 0.39 -0.2
1,913,769 - ABZR87_RS09025 0.39 -0.1
1,913,769 - ABZR87_RS09025 0.39 +0.4
1,913,769 - ABZR87_RS09025 0.39 -0.4
1,913,769 - ABZR87_RS09025 0.39 -0.9
1,913,932 - ABZR87_RS09025 0.52 -0.8
1,913,979 + ABZR87_RS09025 0.56 -1.5
1,913,979 + ABZR87_RS09025 0.56 -0.1
1,913,979 + ABZR87_RS09025 0.56 -0.1
1,913,980 - ABZR87_RS09025 0.56 -0.3
1,913,980 - ABZR87_RS09025 0.56 -0.1
1,914,003 + ABZR87_RS09025 0.58 +0.2
1,914,003 + ABZR87_RS09025 0.58 +0.1
1,914,004 - ABZR87_RS09025 0.58 +0.6
1,914,090 + ABZR87_RS09025 0.64 -0.3
1,914,090 + ABZR87_RS09025 0.64 -0.6
1,914,091 - ABZR87_RS09025 0.64 +0.5
1,914,091 - ABZR87_RS09025 0.64 -1.7
1,914,240 + ABZR87_RS09025 0.76 -0.5
1,914,240 + ABZR87_RS09025 0.76 +0.1
1,914,240 + ABZR87_RS09025 0.76 -2.8
1,914,240 + ABZR87_RS09025 0.76 -0.7
1,914,241 - ABZR87_RS09025 0.76 +0.7
1,914,241 - ABZR87_RS09025 0.76 +0.3
1,914,241 - ABZR87_RS09025 0.76 -0.1
1,914,241 - ABZR87_RS09025 0.76 -0.7
1,914,241 - ABZR87_RS09025 0.76 -1.1
1,914,241 - ABZR87_RS09025 0.76 -1.5
1,914,241 - ABZR87_RS09025 0.76 -0.3
1,914,241 - ABZR87_RS09025 0.76 +0.6
1,914,273 + ABZR87_RS09025 0.79 -0.5
1,914,273 + ABZR87_RS09025 0.79 +1.3
1,914,273 + ABZR87_RS09025 0.79 +0.8
1,914,273 + ABZR87_RS09025 0.79 +1.3
1,914,274 - ABZR87_RS09025 0.79 -0.4
1,914,274 - ABZR87_RS09025 0.79 +0.8
1,914,274 - ABZR87_RS09025 0.79 -0.3
1,914,274 - ABZR87_RS09025 0.79 +1.8
1,914,283 - ABZR87_RS09025 0.79 -0.3
1,914,283 - ABZR87_RS09025 0.79 -0.6
1,914,349 + ABZR87_RS09025 0.85 +0.1
1,914,350 - ABZR87_RS09025 0.85 -0.2
1,914,390 + ABZR87_RS09025 0.88 -0.3
1,914,390 + ABZR87_RS09025 0.88 -0.2
1,914,390 + ABZR87_RS09025 0.88 +0.7
1,914,402 + ABZR87_RS09025 0.89 -0.8
1,914,403 - ABZR87_RS09025 0.89 -0.4
1,914,439 - -0.2
1,914,439 - +0.0
1,914,439 - -0.4
1,914,572 - -0.2
1,914,572 - +0.2
1,914,572 - -0.1
1,914,764 - ABZR87_RS09030 0.22 +0.8
1,915,054 + ABZR87_RS09030 0.52 +0.8
1,915,054 + ABZR87_RS09030 0.52 +1.7
1,915,055 - ABZR87_RS09030 0.52 -0.4
1,915,055 - ABZR87_RS09030 0.52 +0.2
1,915,293 + ABZR87_RS09030 0.76 +0.0
1,915,293 + ABZR87_RS09030 0.76 +0.1
1,915,293 + ABZR87_RS09030 0.76 -0.2
1,915,467 + -0.9
1,915,467 + +0.6
1,915,546 - -2.0
1,915,694 + +0.7
1,915,853 + ABZR87_RS09035 0.23 -1.0
1,915,854 - ABZR87_RS09035 0.23 -1.1
1,915,904 + ABZR87_RS09035 0.28 -0.2
1,915,904 + ABZR87_RS09035 0.28 -1.8
1,915,904 + ABZR87_RS09035 0.28 -1.8
1,915,905 - ABZR87_RS09035 0.28 +0.3
1,916,079 + ABZR87_RS09035 0.45 -1.2
1,916,080 - ABZR87_RS09035 0.45 -1.6

Or see this region's nucleotide sequence