Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07855

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07850 and ABZR87_RS07855 are separated by 5 nucleotidesABZR87_RS07855 and ABZR87_RS07860 are separated by 33 nucleotides ABZR87_RS07850: ABZR87_RS07850 - DEAD/DEAH box helicase, at 1,668,667 to 1,670,346 _RS07850 ABZR87_RS07855: ABZR87_RS07855 - serine/threonine protein kinase, at 1,670,352 to 1,671,404 _RS07855 ABZR87_RS07860: ABZR87_RS07860 - pirin family protein, at 1,671,438 to 1,672,343 _RS07860 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1669.354 kb on + strand, within ABZR87_RS07850at 1669.355 kb on - strand, within ABZR87_RS07850at 1669.355 kb on - strand, within ABZR87_RS07850at 1669.666 kb on + strand, within ABZR87_RS07850at 1669.666 kb on + strand, within ABZR87_RS07850at 1669.666 kb on + strand, within ABZR87_RS07850at 1669.667 kb on - strand, within ABZR87_RS07850at 1669.667 kb on - strand, within ABZR87_RS07850at 1669.667 kb on - strand, within ABZR87_RS07850at 1669.667 kb on - strand, within ABZR87_RS07850at 1669.667 kb on - strand, within ABZR87_RS07850at 1669.667 kb on - strand, within ABZR87_RS07850at 1669.677 kb on + strand, within ABZR87_RS07850at 1669.791 kb on + strand, within ABZR87_RS07850at 1669.876 kb on - strand, within ABZR87_RS07850at 1669.876 kb on - strand, within ABZR87_RS07850at 1670.337 kb on + strandat 1670.337 kb on + strandat 1670.338 kb on - strandat 1670.493 kb on + strand, within ABZR87_RS07855at 1670.493 kb on + strand, within ABZR87_RS07855at 1670.538 kb on + strand, within ABZR87_RS07855at 1670.538 kb on + strand, within ABZR87_RS07855at 1670.588 kb on + strand, within ABZR87_RS07855at 1670.589 kb on - strand, within ABZR87_RS07855at 1670.589 kb on - strand, within ABZR87_RS07855at 1670.934 kb on + strand, within ABZR87_RS07855at 1670.934 kb on + strand, within ABZR87_RS07855at 1670.935 kb on - strand, within ABZR87_RS07855at 1670.935 kb on - strand, within ABZR87_RS07855at 1671.020 kb on + strand, within ABZR87_RS07855at 1671.186 kb on + strand, within ABZR87_RS07855at 1671.222 kb on + strand, within ABZR87_RS07855at 1671.223 kb on - strand, within ABZR87_RS07855at 1671.223 kb on - strand, within ABZR87_RS07855at 1671.261 kb on + strand, within ABZR87_RS07855at 1671.261 kb on + strand, within ABZR87_RS07855at 1671.262 kb on - strand, within ABZR87_RS07855at 1671.440 kb on - strandat 1671.514 kb on + strandat 1671.514 kb on + strandat 1671.515 kb on - strandat 1671.515 kb on - strandat 1671.709 kb on + strand, within ABZR87_RS07860at 1671.709 kb on + strand, within ABZR87_RS07860at 1671.709 kb on + strand, within ABZR87_RS07860at 1671.709 kb on + strand, within ABZR87_RS07860at 1671.710 kb on - strand, within ABZR87_RS07860at 1671.710 kb on - strand, within ABZR87_RS07860at 1671.710 kb on - strand, within ABZR87_RS07860at 1671.710 kb on - strand, within ABZR87_RS07860at 1671.710 kb on - strand, within ABZR87_RS07860at 1671.738 kb on + strand, within ABZR87_RS07860at 1671.739 kb on - strand, within ABZR87_RS07860at 1671.781 kb on + strand, within ABZR87_RS07860at 1671.782 kb on - strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.102 kb on + strand, within ABZR87_RS07860at 1672.103 kb on - strand, within ABZR87_RS07860at 1672.103 kb on - strand, within ABZR87_RS07860at 1672.103 kb on - strand, within ABZR87_RS07860at 1672.103 kb on - strand, within ABZR87_RS07860at 1672.103 kb on - strand, within ABZR87_RS07860at 1672.103 kb on - strand, within ABZR87_RS07860at 1672.103 kb on - strand, within ABZR87_RS07860at 1672.154 kb on - strand, within ABZR87_RS07860at 1672.154 kb on - strand, within ABZR87_RS07860at 1672.154 kb on - strand, within ABZR87_RS07860at 1672.154 kb on - strand, within ABZR87_RS07860at 1672.154 kb on - strand, within ABZR87_RS07860at 1672.154 kb on - strand, within ABZR87_RS07860at 1672.154 kb on - strand, within ABZR87_RS07860at 1672.373 kb on + strandat 1672.374 kb on - strandat 1672.384 kb on + strandat 1672.385 kb on - strandat 1672.385 kb on - strandat 1672.390 kb on - strandat 1672.390 kb on - strandat 1672.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,669,354 + ABZR87_RS07850 0.41 -2.1
1,669,355 - ABZR87_RS07850 0.41 +0.8
1,669,355 - ABZR87_RS07850 0.41 +0.7
1,669,666 + ABZR87_RS07850 0.59 +1.7
1,669,666 + ABZR87_RS07850 0.59 -0.4
1,669,666 + ABZR87_RS07850 0.59 +0.7
1,669,667 - ABZR87_RS07850 0.60 +2.2
1,669,667 - ABZR87_RS07850 0.60 -1.1
1,669,667 - ABZR87_RS07850 0.60 +0.6
1,669,667 - ABZR87_RS07850 0.60 +1.1
1,669,667 - ABZR87_RS07850 0.60 +0.5
1,669,667 - ABZR87_RS07850 0.60 -0.4
1,669,677 + ABZR87_RS07850 0.60 +2.5
1,669,791 + ABZR87_RS07850 0.67 +0.7
1,669,876 - ABZR87_RS07850 0.72 +0.7
1,669,876 - ABZR87_RS07850 0.72 +2.5
1,670,337 + +0.7
1,670,337 + +0.9
1,670,338 - +0.4
1,670,493 + ABZR87_RS07855 0.13 +0.9
1,670,493 + ABZR87_RS07855 0.13 -0.4
1,670,538 + ABZR87_RS07855 0.18 -0.7
1,670,538 + ABZR87_RS07855 0.18 +1.1
1,670,588 + ABZR87_RS07855 0.22 -0.7
1,670,589 - ABZR87_RS07855 0.23 -0.1
1,670,589 - ABZR87_RS07855 0.23 +0.2
1,670,934 + ABZR87_RS07855 0.55 -0.5
1,670,934 + ABZR87_RS07855 0.55 +0.7
1,670,935 - ABZR87_RS07855 0.55 -0.7
1,670,935 - ABZR87_RS07855 0.55 +1.7
1,671,020 + ABZR87_RS07855 0.63 +0.9
1,671,186 + ABZR87_RS07855 0.79 +0.9
1,671,222 + ABZR87_RS07855 0.83 +0.7
1,671,223 - ABZR87_RS07855 0.83 +1.2
1,671,223 - ABZR87_RS07855 0.83 +1.4
1,671,261 + ABZR87_RS07855 0.86 +0.4
1,671,261 + ABZR87_RS07855 0.86 +0.9
1,671,262 - ABZR87_RS07855 0.86 -0.2
1,671,440 - +0.6
1,671,514 + +2.0
1,671,514 + +0.2
1,671,515 - +0.5
1,671,515 - -1.5
1,671,709 + ABZR87_RS07860 0.30 -0.4
1,671,709 + ABZR87_RS07860 0.30 +0.8
1,671,709 + ABZR87_RS07860 0.30 +0.1
1,671,709 + ABZR87_RS07860 0.30 -0.4
1,671,710 - ABZR87_RS07860 0.30 +1.9
1,671,710 - ABZR87_RS07860 0.30 +0.0
1,671,710 - ABZR87_RS07860 0.30 +1.1
1,671,710 - ABZR87_RS07860 0.30 +0.3
1,671,710 - ABZR87_RS07860 0.30 -0.1
1,671,738 + ABZR87_RS07860 0.33 -0.5
1,671,739 - ABZR87_RS07860 0.33 +0.5
1,671,781 + ABZR87_RS07860 0.38 -2.9
1,671,782 - ABZR87_RS07860 0.38 -0.7
1,672,102 + ABZR87_RS07860 0.73 -0.4
1,672,102 + ABZR87_RS07860 0.73 +0.5
1,672,102 + ABZR87_RS07860 0.73 +0.2
1,672,102 + ABZR87_RS07860 0.73 +0.3
1,672,102 + ABZR87_RS07860 0.73 -1.1
1,672,102 + ABZR87_RS07860 0.73 -1.0
1,672,102 + ABZR87_RS07860 0.73 -1.8
1,672,102 + ABZR87_RS07860 0.73 +2.5
1,672,102 + ABZR87_RS07860 0.73 +0.1
1,672,102 + ABZR87_RS07860 0.73 -0.5
1,672,102 + ABZR87_RS07860 0.73 +0.1
1,672,103 - ABZR87_RS07860 0.73 -1.8
1,672,103 - ABZR87_RS07860 0.73 +0.6
1,672,103 - ABZR87_RS07860 0.73 +0.4
1,672,103 - ABZR87_RS07860 0.73 -0.2
1,672,103 - ABZR87_RS07860 0.73 +2.5
1,672,103 - ABZR87_RS07860 0.73 +1.7
1,672,103 - ABZR87_RS07860 0.73 -0.4
1,672,154 - ABZR87_RS07860 0.79 -0.2
1,672,154 - ABZR87_RS07860 0.79 +0.7
1,672,154 - ABZR87_RS07860 0.79 +1.6
1,672,154 - ABZR87_RS07860 0.79 +0.6
1,672,154 - ABZR87_RS07860 0.79 +0.2
1,672,154 - ABZR87_RS07860 0.79 +0.5
1,672,154 - ABZR87_RS07860 0.79 -0.6
1,672,373 + -1.9
1,672,374 - -0.8
1,672,384 + -0.8
1,672,385 - -1.9
1,672,385 - -1.4
1,672,390 - -0.3
1,672,390 - -0.8
1,672,390 - -1.2

Or see this region's nucleotide sequence