Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07825 and ABZR87_RS07830 are separated by 117 nucleotides ABZR87_RS07830 and ABZR87_RS07835 are separated by 257 nucleotides
ABZR87_RS07825: ABZR87_RS07825 - acyl-CoA dehydrogenase, at 1,661,083 to 1,663,593
_RS07825
ABZR87_RS07830: ABZR87_RS07830 - TetR/AcrR family transcriptional regulator, at 1,663,711 to 1,664,775
_RS07830
ABZR87_RS07835: ABZR87_RS07835 - histone deacetylase family protein, at 1,665,033 to 1,666,067
_RS07835
Position (kb)
1663
1664
1665 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1662.746 kb on + strand, within ABZR87_RS07825 at 1662.746 kb on + strand, within ABZR87_RS07825 at 1662.746 kb on + strand, within ABZR87_RS07825 at 1662.746 kb on + strand, within ABZR87_RS07825 at 1662.746 kb on + strand, within ABZR87_RS07825 at 1662.746 kb on + strand, within ABZR87_RS07825 at 1662.746 kb on + strand, within ABZR87_RS07825 at 1662.746 kb on + strand, within ABZR87_RS07825 at 1662.747 kb on - strand, within ABZR87_RS07825 at 1662.747 kb on - strand, within ABZR87_RS07825 at 1662.747 kb on - strand, within ABZR87_RS07825 at 1662.851 kb on + strand, within ABZR87_RS07825 at 1662.908 kb on + strand, within ABZR87_RS07825 at 1662.908 kb on + strand, within ABZR87_RS07825 at 1662.908 kb on + strand, within ABZR87_RS07825 at 1663.040 kb on + strand, within ABZR87_RS07825 at 1663.040 kb on + strand, within ABZR87_RS07825 at 1663.040 kb on + strand, within ABZR87_RS07825 at 1663.064 kb on + strand, within ABZR87_RS07825 at 1663.064 kb on + strand, within ABZR87_RS07825 at 1663.065 kb on - strand, within ABZR87_RS07825 at 1663.109 kb on + strand, within ABZR87_RS07825 at 1663.109 kb on + strand, within ABZR87_RS07825 at 1663.110 kb on - strand, within ABZR87_RS07825 at 1663.110 kb on - strand, within ABZR87_RS07825 at 1663.827 kb on + strand, within ABZR87_RS07830 at 1664.366 kb on + strand, within ABZR87_RS07830 at 1664.381 kb on + strand, within ABZR87_RS07830 at 1664.381 kb on + strand, within ABZR87_RS07830 at 1664.381 kb on + strand, within ABZR87_RS07830 at 1664.382 kb on - strand, within ABZR87_RS07830 at 1664.382 kb on - strand, within ABZR87_RS07830 at 1664.636 kb on + strand, within ABZR87_RS07830 at 1664.636 kb on + strand, within ABZR87_RS07830 at 1664.636 kb on + strand, within ABZR87_RS07830 at 1664.637 kb on - strand, within ABZR87_RS07830 at 1664.637 kb on - strand, within ABZR87_RS07830 at 1664.637 kb on - strand, within ABZR87_RS07830 at 1664.782 kb on + strand at 1664.782 kb on + strand at 1664.783 kb on - strand at 1664.783 kb on - strand at 1664.783 kb on - strand at 1664.796 kb on - strand at 1664.857 kb on + strand at 1664.858 kb on - strand at 1664.858 kb on - strand at 1664.858 kb on - strand at 1664.858 kb on - strand at 1664.858 kb on - strand at 1664.878 kb on + strand at 1664.878 kb on + strand at 1664.878 kb on + strand at 1664.878 kb on + strand at 1664.879 kb on - strand at 1664.927 kb on + strand at 1664.928 kb on - strand at 1664.928 kb on - strand at 1664.928 kb on - strand at 1664.955 kb on + strand at 1664.957 kb on + strand at 1664.957 kb on + strand at 1665.109 kb on + strand at 1665.220 kb on + strand, within ABZR87_RS07835 at 1665.220 kb on + strand, within ABZR87_RS07835 at 1665.220 kb on + strand, within ABZR87_RS07835 at 1665.220 kb on + strand, within ABZR87_RS07835 at 1665.220 kb on + strand, within ABZR87_RS07835 at 1665.221 kb on - strand, within ABZR87_RS07835 at 1665.221 kb on - strand, within ABZR87_RS07835 at 1665.221 kb on - strand, within ABZR87_RS07835 at 1665.221 kb on - strand, within ABZR87_RS07835 at 1665.221 kb on - strand, within ABZR87_RS07835 at 1665.404 kb on - strand, within ABZR87_RS07835 at 1665.436 kb on + strand, within ABZR87_RS07835 at 1665.436 kb on + strand, within ABZR87_RS07835 at 1665.436 kb on + strand, within ABZR87_RS07835 at 1665.436 kb on + strand, within ABZR87_RS07835 at 1665.436 kb on + strand, within ABZR87_RS07835 at 1665.437 kb on + strand, within ABZR87_RS07835 at 1665.437 kb on - strand, within ABZR87_RS07835 at 1665.437 kb on - strand, within ABZR87_RS07835 at 1665.437 kb on - strand, within ABZR87_RS07835 at 1665.437 kb on - strand, within ABZR87_RS07835 at 1665.437 kb on - strand, within ABZR87_RS07835 at 1665.437 kb on - strand, within ABZR87_RS07835 at 1665.437 kb on - strand, within ABZR87_RS07835 at 1665.457 kb on + strand, within ABZR87_RS07835 at 1665.457 kb on + strand, within ABZR87_RS07835 at 1665.457 kb on + strand, within ABZR87_RS07835 at 1665.457 kb on + strand, within ABZR87_RS07835 at 1665.626 kb on - strand, within ABZR87_RS07835 at 1665.688 kb on + strand, within ABZR87_RS07835 at 1665.739 kb on + strand, within ABZR87_RS07835
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 1,662,746 + ABZR87_RS07825 0.66 -0.0 1,662,746 + ABZR87_RS07825 0.66 -0.6 1,662,746 + ABZR87_RS07825 0.66 -0.5 1,662,746 + ABZR87_RS07825 0.66 +1.5 1,662,746 + ABZR87_RS07825 0.66 -0.1 1,662,746 + ABZR87_RS07825 0.66 +0.2 1,662,746 + ABZR87_RS07825 0.66 +1.5 1,662,746 + ABZR87_RS07825 0.66 +0.2 1,662,747 - ABZR87_RS07825 0.66 +0.1 1,662,747 - ABZR87_RS07825 0.66 -0.3 1,662,747 - ABZR87_RS07825 0.66 +1.2 1,662,851 + ABZR87_RS07825 0.70 -1.5 1,662,908 + ABZR87_RS07825 0.73 +1.1 1,662,908 + ABZR87_RS07825 0.73 -1.2 1,662,908 + ABZR87_RS07825 0.73 +0.9 1,663,040 + ABZR87_RS07825 0.78 +0.7 1,663,040 + ABZR87_RS07825 0.78 +0.7 1,663,040 + ABZR87_RS07825 0.78 -0.4 1,663,064 + ABZR87_RS07825 0.79 +0.3 1,663,064 + ABZR87_RS07825 0.79 +0.6 1,663,065 - ABZR87_RS07825 0.79 -0.4 1,663,109 + ABZR87_RS07825 0.81 +0.5 1,663,109 + ABZR87_RS07825 0.81 +1.0 1,663,110 - ABZR87_RS07825 0.81 -0.8 1,663,110 - ABZR87_RS07825 0.81 +0.7 1,663,827 + ABZR87_RS07830 0.11 -2.0 1,664,366 + ABZR87_RS07830 0.62 +0.0 1,664,381 + ABZR87_RS07830 0.63 +0.1 1,664,381 + ABZR87_RS07830 0.63 -2.2 1,664,381 + ABZR87_RS07830 0.63 -0.4 1,664,382 - ABZR87_RS07830 0.63 +0.1 1,664,382 - ABZR87_RS07830 0.63 -1.0 1,664,636 + ABZR87_RS07830 0.87 -2.0 1,664,636 + ABZR87_RS07830 0.87 +0.9 1,664,636 + ABZR87_RS07830 0.87 +0.3 1,664,637 - ABZR87_RS07830 0.87 +0.1 1,664,637 - ABZR87_RS07830 0.87 -0.4 1,664,637 - ABZR87_RS07830 0.87 -1.3 1,664,782 + +0.5 1,664,782 + -0.7 1,664,783 - +0.1 1,664,783 - +0.3 1,664,783 - -1.0 1,664,796 - -3.5 1,664,857 + +0.8 1,664,858 - -2.6 1,664,858 - -0.6 1,664,858 - -0.9 1,664,858 - -2.9 1,664,858 - -0.0 1,664,878 + -2.4 1,664,878 + +0.6 1,664,878 + -0.3 1,664,878 + +1.5 1,664,879 - -0.5 1,664,927 + -1.6 1,664,928 - +0.8 1,664,928 - -1.7 1,664,928 - +0.2 1,664,955 + -0.5 1,664,957 + -1.2 1,664,957 + +1.0 1,665,109 + +0.3 1,665,220 + ABZR87_RS07835 0.18 +1.1 1,665,220 + ABZR87_RS07835 0.18 +0.2 1,665,220 + ABZR87_RS07835 0.18 +0.4 1,665,220 + ABZR87_RS07835 0.18 -0.3 1,665,220 + ABZR87_RS07835 0.18 +0.8 1,665,221 - ABZR87_RS07835 0.18 -1.0 1,665,221 - ABZR87_RS07835 0.18 -0.1 1,665,221 - ABZR87_RS07835 0.18 +0.5 1,665,221 - ABZR87_RS07835 0.18 +0.9 1,665,221 - ABZR87_RS07835 0.18 +1.5 1,665,404 - ABZR87_RS07835 0.36 +0.9 1,665,436 + ABZR87_RS07835 0.39 +0.3 1,665,436 + ABZR87_RS07835 0.39 +0.5 1,665,436 + ABZR87_RS07835 0.39 +0.2 1,665,436 + ABZR87_RS07835 0.39 -0.1 1,665,436 + ABZR87_RS07835 0.39 +0.2 1,665,437 + ABZR87_RS07835 0.39 +1.0 1,665,437 - ABZR87_RS07835 0.39 +0.3 1,665,437 - ABZR87_RS07835 0.39 +0.6 1,665,437 - ABZR87_RS07835 0.39 +2.1 1,665,437 - ABZR87_RS07835 0.39 +0.3 1,665,437 - ABZR87_RS07835 0.39 -0.7 1,665,437 - ABZR87_RS07835 0.39 +0.2 1,665,437 - ABZR87_RS07835 0.39 +0.0 1,665,457 + ABZR87_RS07835 0.41 +1.0 1,665,457 + ABZR87_RS07835 0.41 +1.7 1,665,457 + ABZR87_RS07835 0.41 -1.4 1,665,457 + ABZR87_RS07835 0.41 +0.6 1,665,626 - ABZR87_RS07835 0.57 -0.3 1,665,688 + ABZR87_RS07835 0.63 +0.3 1,665,739 + ABZR87_RS07835 0.68 +0.8
Or see this region's nucleotide sequence