Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07830

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07825 and ABZR87_RS07830 are separated by 117 nucleotidesABZR87_RS07830 and ABZR87_RS07835 are separated by 257 nucleotides ABZR87_RS07825: ABZR87_RS07825 - acyl-CoA dehydrogenase, at 1,661,083 to 1,663,593 _RS07825 ABZR87_RS07830: ABZR87_RS07830 - TetR/AcrR family transcriptional regulator, at 1,663,711 to 1,664,775 _RS07830 ABZR87_RS07835: ABZR87_RS07835 - histone deacetylase family protein, at 1,665,033 to 1,666,067 _RS07835 Position (kb) 1663 1664 1665Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1662.746 kb on + strand, within ABZR87_RS07825at 1662.746 kb on + strand, within ABZR87_RS07825at 1662.746 kb on + strand, within ABZR87_RS07825at 1662.746 kb on + strand, within ABZR87_RS07825at 1662.746 kb on + strand, within ABZR87_RS07825at 1662.746 kb on + strand, within ABZR87_RS07825at 1662.746 kb on + strand, within ABZR87_RS07825at 1662.746 kb on + strand, within ABZR87_RS07825at 1662.747 kb on - strand, within ABZR87_RS07825at 1662.747 kb on - strand, within ABZR87_RS07825at 1662.747 kb on - strand, within ABZR87_RS07825at 1662.851 kb on + strand, within ABZR87_RS07825at 1662.908 kb on + strand, within ABZR87_RS07825at 1662.908 kb on + strand, within ABZR87_RS07825at 1662.908 kb on + strand, within ABZR87_RS07825at 1663.040 kb on + strand, within ABZR87_RS07825at 1663.040 kb on + strand, within ABZR87_RS07825at 1663.040 kb on + strand, within ABZR87_RS07825at 1663.064 kb on + strand, within ABZR87_RS07825at 1663.064 kb on + strand, within ABZR87_RS07825at 1663.065 kb on - strand, within ABZR87_RS07825at 1663.109 kb on + strand, within ABZR87_RS07825at 1663.109 kb on + strand, within ABZR87_RS07825at 1663.110 kb on - strand, within ABZR87_RS07825at 1663.110 kb on - strand, within ABZR87_RS07825at 1663.827 kb on + strand, within ABZR87_RS07830at 1664.366 kb on + strand, within ABZR87_RS07830at 1664.381 kb on + strand, within ABZR87_RS07830at 1664.381 kb on + strand, within ABZR87_RS07830at 1664.381 kb on + strand, within ABZR87_RS07830at 1664.382 kb on - strand, within ABZR87_RS07830at 1664.382 kb on - strand, within ABZR87_RS07830at 1664.636 kb on + strand, within ABZR87_RS07830at 1664.636 kb on + strand, within ABZR87_RS07830at 1664.636 kb on + strand, within ABZR87_RS07830at 1664.637 kb on - strand, within ABZR87_RS07830at 1664.637 kb on - strand, within ABZR87_RS07830at 1664.637 kb on - strand, within ABZR87_RS07830at 1664.782 kb on + strandat 1664.782 kb on + strandat 1664.783 kb on - strandat 1664.783 kb on - strandat 1664.783 kb on - strandat 1664.796 kb on - strandat 1664.857 kb on + strandat 1664.858 kb on - strandat 1664.858 kb on - strandat 1664.858 kb on - strandat 1664.858 kb on - strandat 1664.858 kb on - strandat 1664.878 kb on + strandat 1664.878 kb on + strandat 1664.878 kb on + strandat 1664.878 kb on + strandat 1664.879 kb on - strandat 1664.927 kb on + strandat 1664.928 kb on - strandat 1664.928 kb on - strandat 1664.928 kb on - strandat 1664.955 kb on + strandat 1664.957 kb on + strandat 1664.957 kb on + strandat 1665.109 kb on + strandat 1665.220 kb on + strand, within ABZR87_RS07835at 1665.220 kb on + strand, within ABZR87_RS07835at 1665.220 kb on + strand, within ABZR87_RS07835at 1665.220 kb on + strand, within ABZR87_RS07835at 1665.220 kb on + strand, within ABZR87_RS07835at 1665.221 kb on - strand, within ABZR87_RS07835at 1665.221 kb on - strand, within ABZR87_RS07835at 1665.221 kb on - strand, within ABZR87_RS07835at 1665.221 kb on - strand, within ABZR87_RS07835at 1665.221 kb on - strand, within ABZR87_RS07835at 1665.404 kb on - strand, within ABZR87_RS07835at 1665.436 kb on + strand, within ABZR87_RS07835at 1665.436 kb on + strand, within ABZR87_RS07835at 1665.436 kb on + strand, within ABZR87_RS07835at 1665.436 kb on + strand, within ABZR87_RS07835at 1665.436 kb on + strand, within ABZR87_RS07835at 1665.437 kb on + strand, within ABZR87_RS07835at 1665.437 kb on - strand, within ABZR87_RS07835at 1665.437 kb on - strand, within ABZR87_RS07835at 1665.437 kb on - strand, within ABZR87_RS07835at 1665.437 kb on - strand, within ABZR87_RS07835at 1665.437 kb on - strand, within ABZR87_RS07835at 1665.437 kb on - strand, within ABZR87_RS07835at 1665.437 kb on - strand, within ABZR87_RS07835at 1665.457 kb on + strand, within ABZR87_RS07835at 1665.457 kb on + strand, within ABZR87_RS07835at 1665.457 kb on + strand, within ABZR87_RS07835at 1665.457 kb on + strand, within ABZR87_RS07835at 1665.626 kb on - strand, within ABZR87_RS07835at 1665.688 kb on + strand, within ABZR87_RS07835at 1665.739 kb on + strand, within ABZR87_RS07835

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,662,746 + ABZR87_RS07825 0.66 -0.0
1,662,746 + ABZR87_RS07825 0.66 -0.6
1,662,746 + ABZR87_RS07825 0.66 -0.5
1,662,746 + ABZR87_RS07825 0.66 +1.5
1,662,746 + ABZR87_RS07825 0.66 -0.1
1,662,746 + ABZR87_RS07825 0.66 +0.2
1,662,746 + ABZR87_RS07825 0.66 +1.5
1,662,746 + ABZR87_RS07825 0.66 +0.2
1,662,747 - ABZR87_RS07825 0.66 +0.1
1,662,747 - ABZR87_RS07825 0.66 -0.3
1,662,747 - ABZR87_RS07825 0.66 +1.2
1,662,851 + ABZR87_RS07825 0.70 -1.5
1,662,908 + ABZR87_RS07825 0.73 +1.1
1,662,908 + ABZR87_RS07825 0.73 -1.2
1,662,908 + ABZR87_RS07825 0.73 +0.9
1,663,040 + ABZR87_RS07825 0.78 +0.7
1,663,040 + ABZR87_RS07825 0.78 +0.7
1,663,040 + ABZR87_RS07825 0.78 -0.4
1,663,064 + ABZR87_RS07825 0.79 +0.3
1,663,064 + ABZR87_RS07825 0.79 +0.6
1,663,065 - ABZR87_RS07825 0.79 -0.4
1,663,109 + ABZR87_RS07825 0.81 +0.5
1,663,109 + ABZR87_RS07825 0.81 +1.0
1,663,110 - ABZR87_RS07825 0.81 -0.8
1,663,110 - ABZR87_RS07825 0.81 +0.7
1,663,827 + ABZR87_RS07830 0.11 -2.0
1,664,366 + ABZR87_RS07830 0.62 +0.0
1,664,381 + ABZR87_RS07830 0.63 +0.1
1,664,381 + ABZR87_RS07830 0.63 -2.2
1,664,381 + ABZR87_RS07830 0.63 -0.4
1,664,382 - ABZR87_RS07830 0.63 +0.1
1,664,382 - ABZR87_RS07830 0.63 -1.0
1,664,636 + ABZR87_RS07830 0.87 -2.0
1,664,636 + ABZR87_RS07830 0.87 +0.9
1,664,636 + ABZR87_RS07830 0.87 +0.3
1,664,637 - ABZR87_RS07830 0.87 +0.1
1,664,637 - ABZR87_RS07830 0.87 -0.4
1,664,637 - ABZR87_RS07830 0.87 -1.3
1,664,782 + +0.5
1,664,782 + -0.7
1,664,783 - +0.1
1,664,783 - +0.3
1,664,783 - -1.0
1,664,796 - -3.5
1,664,857 + +0.8
1,664,858 - -2.6
1,664,858 - -0.6
1,664,858 - -0.9
1,664,858 - -2.9
1,664,858 - -0.0
1,664,878 + -2.4
1,664,878 + +0.6
1,664,878 + -0.3
1,664,878 + +1.5
1,664,879 - -0.5
1,664,927 + -1.6
1,664,928 - +0.8
1,664,928 - -1.7
1,664,928 - +0.2
1,664,955 + -0.5
1,664,957 + -1.2
1,664,957 + +1.0
1,665,109 + +0.3
1,665,220 + ABZR87_RS07835 0.18 +1.1
1,665,220 + ABZR87_RS07835 0.18 +0.2
1,665,220 + ABZR87_RS07835 0.18 +0.4
1,665,220 + ABZR87_RS07835 0.18 -0.3
1,665,220 + ABZR87_RS07835 0.18 +0.8
1,665,221 - ABZR87_RS07835 0.18 -1.0
1,665,221 - ABZR87_RS07835 0.18 -0.1
1,665,221 - ABZR87_RS07835 0.18 +0.5
1,665,221 - ABZR87_RS07835 0.18 +0.9
1,665,221 - ABZR87_RS07835 0.18 +1.5
1,665,404 - ABZR87_RS07835 0.36 +0.9
1,665,436 + ABZR87_RS07835 0.39 +0.3
1,665,436 + ABZR87_RS07835 0.39 +0.5
1,665,436 + ABZR87_RS07835 0.39 +0.2
1,665,436 + ABZR87_RS07835 0.39 -0.1
1,665,436 + ABZR87_RS07835 0.39 +0.2
1,665,437 + ABZR87_RS07835 0.39 +1.0
1,665,437 - ABZR87_RS07835 0.39 +0.3
1,665,437 - ABZR87_RS07835 0.39 +0.6
1,665,437 - ABZR87_RS07835 0.39 +2.1
1,665,437 - ABZR87_RS07835 0.39 +0.3
1,665,437 - ABZR87_RS07835 0.39 -0.7
1,665,437 - ABZR87_RS07835 0.39 +0.2
1,665,437 - ABZR87_RS07835 0.39 +0.0
1,665,457 + ABZR87_RS07835 0.41 +1.0
1,665,457 + ABZR87_RS07835 0.41 +1.7
1,665,457 + ABZR87_RS07835 0.41 -1.4
1,665,457 + ABZR87_RS07835 0.41 +0.6
1,665,626 - ABZR87_RS07835 0.57 -0.3
1,665,688 + ABZR87_RS07835 0.63 +0.3
1,665,739 + ABZR87_RS07835 0.68 +0.8

Or see this region's nucleotide sequence