Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06100

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06095 and ABZR87_RS06100 are separated by 4 nucleotidesABZR87_RS06100 and ABZR87_RS06105 are separated by 4 nucleotidesABZR87_RS06105 and ABZR87_RS06110 are separated by 57 nucleotides ABZR87_RS06095: ABZR87_RS06095 - amidohydrolase, at 1,301,503 to 1,303,341 _RS06095 ABZR87_RS06100: ABZR87_RS06100 - DoxX family protein, at 1,303,346 to 1,303,777 _RS06100 ABZR87_RS06105: ABZR87_RS06105 - XapX domain-containing protein, at 1,303,782 to 1,304,102 _RS06105 ABZR87_RS06110: ABZR87_RS06110 - alpha/beta hydrolase, at 1,304,160 to 1,304,981 _RS06110 Position (kb) 1303 1304Strain fitness (log2 ratio) -2 -1 0 1 2at 1302.495 kb on - strand, within ABZR87_RS06095at 1302.563 kb on + strand, within ABZR87_RS06095at 1302.563 kb on + strand, within ABZR87_RS06095at 1302.563 kb on + strand, within ABZR87_RS06095at 1302.564 kb on - strand, within ABZR87_RS06095at 1302.564 kb on - strand, within ABZR87_RS06095at 1302.564 kb on - strand, within ABZR87_RS06095at 1302.617 kb on + strand, within ABZR87_RS06095at 1302.618 kb on - strand, within ABZR87_RS06095at 1302.629 kb on + strand, within ABZR87_RS06095at 1302.630 kb on - strand, within ABZR87_RS06095at 1302.630 kb on - strand, within ABZR87_RS06095at 1302.758 kb on + strand, within ABZR87_RS06095at 1302.758 kb on + strand, within ABZR87_RS06095at 1302.759 kb on - strand, within ABZR87_RS06095at 1302.861 kb on - strand, within ABZR87_RS06095at 1302.861 kb on - strand, within ABZR87_RS06095at 1303.350 kb on + strandat 1303.629 kb on + strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.051 kb on + strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.093 kb on - strandat 1304.368 kb on + strand, within ABZR87_RS06110at 1304.368 kb on + strand, within ABZR87_RS06110at 1304.401 kb on + strand, within ABZR87_RS06110at 1304.402 kb on - strand, within ABZR87_RS06110at 1304.402 kb on - strand, within ABZR87_RS06110at 1304.402 kb on - strand, within ABZR87_RS06110at 1304.515 kb on + strand, within ABZR87_RS06110at 1304.515 kb on + strand, within ABZR87_RS06110at 1304.671 kb on + strand, within ABZR87_RS06110at 1304.671 kb on + strand, within ABZR87_RS06110at 1304.671 kb on + strand, within ABZR87_RS06110at 1304.671 kb on + strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.764 kb on + strand, within ABZR87_RS06110at 1304.764 kb on + strand, within ABZR87_RS06110at 1304.764 kb on + strand, within ABZR87_RS06110at 1304.765 kb on - strand, within ABZR87_RS06110at 1304.765 kb on - strand, within ABZR87_RS06110at 1304.765 kb on - strand, within ABZR87_RS06110at 1304.765 kb on - strand, within ABZR87_RS06110

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,302,495 - ABZR87_RS06095 0.54 +0.5
1,302,563 + ABZR87_RS06095 0.58 +0.5
1,302,563 + ABZR87_RS06095 0.58 -0.3
1,302,563 + ABZR87_RS06095 0.58 +0.8
1,302,564 - ABZR87_RS06095 0.58 +1.0
1,302,564 - ABZR87_RS06095 0.58 -0.3
1,302,564 - ABZR87_RS06095 0.58 +0.5
1,302,617 + ABZR87_RS06095 0.61 +1.7
1,302,618 - ABZR87_RS06095 0.61 +0.4
1,302,629 + ABZR87_RS06095 0.61 -0.1
1,302,630 - ABZR87_RS06095 0.61 +0.6
1,302,630 - ABZR87_RS06095 0.61 -0.3
1,302,758 + ABZR87_RS06095 0.68 -1.6
1,302,758 + ABZR87_RS06095 0.68 -1.4
1,302,759 - ABZR87_RS06095 0.68 -0.3
1,302,861 - ABZR87_RS06095 0.74 +0.3
1,302,861 - ABZR87_RS06095 0.74 +0.2
1,303,350 + +1.0
1,303,629 + ABZR87_RS06100 0.66 -0.8
1,303,630 - ABZR87_RS06100 0.66 +1.6
1,303,630 - ABZR87_RS06100 0.66 +0.0
1,303,630 - ABZR87_RS06100 0.66 +1.0
1,303,630 - ABZR87_RS06100 0.66 +0.0
1,304,050 + ABZR87_RS06105 0.83 -0.6
1,304,050 + ABZR87_RS06105 0.83 +1.3
1,304,050 + ABZR87_RS06105 0.83 +0.6
1,304,050 + ABZR87_RS06105 0.83 -0.5
1,304,050 + ABZR87_RS06105 0.83 -0.8
1,304,050 + ABZR87_RS06105 0.83 -0.1
1,304,050 + ABZR87_RS06105 0.83 +0.7
1,304,050 + ABZR87_RS06105 0.83 -0.4
1,304,050 + ABZR87_RS06105 0.83 -0.7
1,304,050 + ABZR87_RS06105 0.83 -0.3
1,304,050 + ABZR87_RS06105 0.83 -1.1
1,304,051 + ABZR87_RS06105 0.84 +0.5
1,304,051 - ABZR87_RS06105 0.84 +0.1
1,304,051 - ABZR87_RS06105 0.84 -1.9
1,304,051 - ABZR87_RS06105 0.84 +0.3
1,304,051 - ABZR87_RS06105 0.84 +0.9
1,304,051 - ABZR87_RS06105 0.84 -1.8
1,304,051 - ABZR87_RS06105 0.84 +0.4
1,304,051 - ABZR87_RS06105 0.84 -0.3
1,304,051 - ABZR87_RS06105 0.84 -0.3
1,304,051 - ABZR87_RS06105 0.84 +0.1
1,304,051 - ABZR87_RS06105 0.84 +0.9
1,304,051 - ABZR87_RS06105 0.84 +1.0
1,304,051 - ABZR87_RS06105 0.84 +0.6
1,304,092 + +0.3
1,304,092 + +0.4
1,304,092 + -0.6
1,304,092 + +0.1
1,304,093 - +0.5
1,304,368 + ABZR87_RS06110 0.25 -0.1
1,304,368 + ABZR87_RS06110 0.25 +0.7
1,304,401 + ABZR87_RS06110 0.29 +0.2
1,304,402 - ABZR87_RS06110 0.29 -1.6
1,304,402 - ABZR87_RS06110 0.29 -1.4
1,304,402 - ABZR87_RS06110 0.29 +0.8
1,304,515 + ABZR87_RS06110 0.43 -0.5
1,304,515 + ABZR87_RS06110 0.43 -1.0
1,304,671 + ABZR87_RS06110 0.62 +0.8
1,304,671 + ABZR87_RS06110 0.62 +0.2
1,304,671 + ABZR87_RS06110 0.62 +0.4
1,304,671 + ABZR87_RS06110 0.62 +1.8
1,304,672 - ABZR87_RS06110 0.62 +0.5
1,304,672 - ABZR87_RS06110 0.62 +0.6
1,304,672 - ABZR87_RS06110 0.62 -0.8
1,304,672 - ABZR87_RS06110 0.62 +0.3
1,304,672 - ABZR87_RS06110 0.62 +0.8
1,304,672 - ABZR87_RS06110 0.62 -1.5
1,304,672 - ABZR87_RS06110 0.62 +2.0
1,304,764 + ABZR87_RS06110 0.73 -0.7
1,304,764 + ABZR87_RS06110 0.73 +0.5
1,304,764 + ABZR87_RS06110 0.73 +0.5
1,304,765 - ABZR87_RS06110 0.74 +0.7
1,304,765 - ABZR87_RS06110 0.74 +0.8
1,304,765 - ABZR87_RS06110 0.74 -0.5
1,304,765 - ABZR87_RS06110 0.74 +0.2

Or see this region's nucleotide sequence