Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05655

Experiment: Dodecandioic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS05645 and ABZR87_RS05650 are separated by 24 nucleotidesABZR87_RS05650 and ABZR87_RS05655 are separated by 279 nucleotidesABZR87_RS05655 and ABZR87_RS05660 are separated by 25 nucleotides ABZR87_RS05645: ABZR87_RS05645 - SDR family oxidoreductase, at 1,199,138 to 1,199,956 _RS05645 ABZR87_RS05650: ABZR87_RS05650 - dihydroneopterin aldolase, at 1,199,981 to 1,200,379 _RS05650 ABZR87_RS05655: ABZR87_RS05655 - arginase, at 1,200,659 to 1,201,588 _RS05655 ABZR87_RS05660: ABZR87_RS05660 - ornithine--oxo-acid transaminase, at 1,201,614 to 1,202,840 _RS05660 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1199.855 kb on + strand, within ABZR87_RS05645at 1199.855 kb on + strand, within ABZR87_RS05645at 1199.855 kb on + strand, within ABZR87_RS05645at 1199.954 kb on + strandat 1199.954 kb on + strandat 1199.954 kb on + strandat 1200.364 kb on + strandat 1200.509 kb on + strandat 1200.509 kb on + strandat 1200.601 kb on + strandat 1200.601 kb on + strandat 1200.601 kb on + strandat 1200.660 kb on + strandat 1200.660 kb on + strandat 1200.661 kb on - strandat 1200.661 kb on - strandat 1200.661 kb on - strandat 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.772 kb on - strand, within ABZR87_RS05655at 1200.772 kb on - strand, within ABZR87_RS05655at 1200.772 kb on - strand, within ABZR87_RS05655at 1200.772 kb on - strand, within ABZR87_RS05655at 1201.056 kb on + strand, within ABZR87_RS05655at 1201.057 kb on - strand, within ABZR87_RS05655at 1201.057 kb on - strand, within ABZR87_RS05655at 1201.057 kb on - strand, within ABZR87_RS05655at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.086 kb on - strand, within ABZR87_RS05660at 1202.086 kb on - strand, within ABZR87_RS05660at 1202.086 kb on - strand, within ABZR87_RS05660at 1202.212 kb on + strand, within ABZR87_RS05660at 1202.212 kb on + strand, within ABZR87_RS05660at 1202.212 kb on + strand, within ABZR87_RS05660at 1202.213 kb on - strand, within ABZR87_RS05660at 1202.359 kb on + strand, within ABZR87_RS05660at 1202.365 kb on + strand, within ABZR87_RS05660at 1202.365 kb on + strand, within ABZR87_RS05660at 1202.365 kb on + strand, within ABZR87_RS05660at 1202.365 kb on + strand, within ABZR87_RS05660at 1202.366 kb on - strand, within ABZR87_RS05660at 1202.366 kb on - strand, within ABZR87_RS05660at 1202.366 kb on - strand, within ABZR87_RS05660at 1202.366 kb on - strand, within ABZR87_RS05660at 1202.532 kb on + strand, within ABZR87_RS05660at 1202.532 kb on + strand, within ABZR87_RS05660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
remove
1,199,855 + ABZR87_RS05645 0.88 +2.5
1,199,855 + ABZR87_RS05645 0.88 +2.4
1,199,855 + ABZR87_RS05645 0.88 +1.7
1,199,954 + -0.0
1,199,954 + +0.6
1,199,954 + +0.3
1,200,364 + +0.1
1,200,509 + -1.1
1,200,509 + -0.4
1,200,601 + -0.0
1,200,601 + +0.7
1,200,601 + +0.4
1,200,660 + +0.6
1,200,660 + +0.3
1,200,661 - -0.8
1,200,661 - +0.8
1,200,661 - +0.7
1,200,771 + ABZR87_RS05655 0.12 -0.4
1,200,771 + ABZR87_RS05655 0.12 -0.1
1,200,771 + ABZR87_RS05655 0.12 -0.5
1,200,771 + ABZR87_RS05655 0.12 +1.2
1,200,771 + ABZR87_RS05655 0.12 -1.2
1,200,771 + ABZR87_RS05655 0.12 +0.5
1,200,771 + ABZR87_RS05655 0.12 +0.6
1,200,771 + ABZR87_RS05655 0.12 -1.0
1,200,772 - ABZR87_RS05655 0.12 +0.4
1,200,772 - ABZR87_RS05655 0.12 -0.0
1,200,772 - ABZR87_RS05655 0.12 -0.8
1,200,772 - ABZR87_RS05655 0.12 -0.5
1,201,056 + ABZR87_RS05655 0.43 -0.6
1,201,057 - ABZR87_RS05655 0.43 -0.6
1,201,057 - ABZR87_RS05655 0.43 -0.9
1,201,057 - ABZR87_RS05655 0.43 -2.0
1,202,085 + ABZR87_RS05660 0.38 +0.3
1,202,085 + ABZR87_RS05660 0.38 -0.1
1,202,085 + ABZR87_RS05660 0.38 +1.1
1,202,085 + ABZR87_RS05660 0.38 -0.2
1,202,085 + ABZR87_RS05660 0.38 +0.2
1,202,085 + ABZR87_RS05660 0.38 +0.0
1,202,085 + ABZR87_RS05660 0.38 -0.2
1,202,086 - ABZR87_RS05660 0.38 -0.4
1,202,086 - ABZR87_RS05660 0.38 -0.5
1,202,086 - ABZR87_RS05660 0.38 +0.4
1,202,212 + ABZR87_RS05660 0.49 -0.8
1,202,212 + ABZR87_RS05660 0.49 -1.2
1,202,212 + ABZR87_RS05660 0.49 -0.9
1,202,213 - ABZR87_RS05660 0.49 +0.3
1,202,359 + ABZR87_RS05660 0.61 -2.4
1,202,365 + ABZR87_RS05660 0.61 +1.3
1,202,365 + ABZR87_RS05660 0.61 +0.5
1,202,365 + ABZR87_RS05660 0.61 -1.3
1,202,365 + ABZR87_RS05660 0.61 +0.3
1,202,366 - ABZR87_RS05660 0.61 -0.7
1,202,366 - ABZR87_RS05660 0.61 +0.5
1,202,366 - ABZR87_RS05660 0.61 +0.0
1,202,366 - ABZR87_RS05660 0.61 -2.1
1,202,532 + ABZR87_RS05660 0.75 +3.3
1,202,532 + ABZR87_RS05660 0.75 -0.0

Or see this region's nucleotide sequence