Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05645 and ABZR87_RS05650 are separated by 24 nucleotides ABZR87_RS05650 and ABZR87_RS05655 are separated by 279 nucleotides ABZR87_RS05655 and ABZR87_RS05660 are separated by 25 nucleotides
ABZR87_RS05645: ABZR87_RS05645 - SDR family oxidoreductase, at 1,199,138 to 1,199,956
_RS05645
ABZR87_RS05650: ABZR87_RS05650 - dihydroneopterin aldolase, at 1,199,981 to 1,200,379
_RS05650
ABZR87_RS05655: ABZR87_RS05655 - arginase, at 1,200,659 to 1,201,588
_RS05655
ABZR87_RS05660: ABZR87_RS05660 - ornithine--oxo-acid transaminase, at 1,201,614 to 1,202,840
_RS05660
Position (kb)
1200
1201
1202 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1199.855 kb on + strand, within ABZR87_RS05645 at 1199.855 kb on + strand, within ABZR87_RS05645 at 1199.855 kb on + strand, within ABZR87_RS05645 at 1199.954 kb on + strand at 1199.954 kb on + strand at 1199.954 kb on + strand at 1200.364 kb on + strand at 1200.509 kb on + strand at 1200.509 kb on + strand at 1200.601 kb on + strand at 1200.601 kb on + strand at 1200.601 kb on + strand at 1200.660 kb on + strand at 1200.660 kb on + strand at 1200.661 kb on - strand at 1200.661 kb on - strand at 1200.661 kb on - strand at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.772 kb on - strand, within ABZR87_RS05655 at 1200.772 kb on - strand, within ABZR87_RS05655 at 1200.772 kb on - strand, within ABZR87_RS05655 at 1200.772 kb on - strand, within ABZR87_RS05655 at 1201.056 kb on + strand, within ABZR87_RS05655 at 1201.057 kb on - strand, within ABZR87_RS05655 at 1201.057 kb on - strand, within ABZR87_RS05655 at 1201.057 kb on - strand, within ABZR87_RS05655 at 1202.085 kb on + strand, within ABZR87_RS05660 at 1202.085 kb on + strand, within ABZR87_RS05660 at 1202.085 kb on + strand, within ABZR87_RS05660 at 1202.085 kb on + strand, within ABZR87_RS05660 at 1202.085 kb on + strand, within ABZR87_RS05660 at 1202.085 kb on + strand, within ABZR87_RS05660 at 1202.085 kb on + strand, within ABZR87_RS05660 at 1202.086 kb on - strand, within ABZR87_RS05660 at 1202.086 kb on - strand, within ABZR87_RS05660 at 1202.086 kb on - strand, within ABZR87_RS05660 at 1202.212 kb on + strand, within ABZR87_RS05660 at 1202.212 kb on + strand, within ABZR87_RS05660 at 1202.212 kb on + strand, within ABZR87_RS05660 at 1202.213 kb on - strand, within ABZR87_RS05660 at 1202.359 kb on + strand, within ABZR87_RS05660 at 1202.365 kb on + strand, within ABZR87_RS05660 at 1202.365 kb on + strand, within ABZR87_RS05660 at 1202.365 kb on + strand, within ABZR87_RS05660 at 1202.365 kb on + strand, within ABZR87_RS05660 at 1202.366 kb on - strand, within ABZR87_RS05660 at 1202.366 kb on - strand, within ABZR87_RS05660 at 1202.366 kb on - strand, within ABZR87_RS05660 at 1202.366 kb on - strand, within ABZR87_RS05660 at 1202.532 kb on + strand, within ABZR87_RS05660 at 1202.532 kb on + strand, within ABZR87_RS05660
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 1,199,855 + ABZR87_RS05645 0.88 +2.5 1,199,855 + ABZR87_RS05645 0.88 +2.4 1,199,855 + ABZR87_RS05645 0.88 +1.7 1,199,954 + -0.0 1,199,954 + +0.6 1,199,954 + +0.3 1,200,364 + +0.1 1,200,509 + -1.1 1,200,509 + -0.4 1,200,601 + -0.0 1,200,601 + +0.7 1,200,601 + +0.4 1,200,660 + +0.6 1,200,660 + +0.3 1,200,661 - -0.8 1,200,661 - +0.8 1,200,661 - +0.7 1,200,771 + ABZR87_RS05655 0.12 -0.4 1,200,771 + ABZR87_RS05655 0.12 -0.1 1,200,771 + ABZR87_RS05655 0.12 -0.5 1,200,771 + ABZR87_RS05655 0.12 +1.2 1,200,771 + ABZR87_RS05655 0.12 -1.2 1,200,771 + ABZR87_RS05655 0.12 +0.5 1,200,771 + ABZR87_RS05655 0.12 +0.6 1,200,771 + ABZR87_RS05655 0.12 -1.0 1,200,772 - ABZR87_RS05655 0.12 +0.4 1,200,772 - ABZR87_RS05655 0.12 -0.0 1,200,772 - ABZR87_RS05655 0.12 -0.8 1,200,772 - ABZR87_RS05655 0.12 -0.5 1,201,056 + ABZR87_RS05655 0.43 -0.6 1,201,057 - ABZR87_RS05655 0.43 -0.6 1,201,057 - ABZR87_RS05655 0.43 -0.9 1,201,057 - ABZR87_RS05655 0.43 -2.0 1,202,085 + ABZR87_RS05660 0.38 +0.3 1,202,085 + ABZR87_RS05660 0.38 -0.1 1,202,085 + ABZR87_RS05660 0.38 +1.1 1,202,085 + ABZR87_RS05660 0.38 -0.2 1,202,085 + ABZR87_RS05660 0.38 +0.2 1,202,085 + ABZR87_RS05660 0.38 +0.0 1,202,085 + ABZR87_RS05660 0.38 -0.2 1,202,086 - ABZR87_RS05660 0.38 -0.4 1,202,086 - ABZR87_RS05660 0.38 -0.5 1,202,086 - ABZR87_RS05660 0.38 +0.4 1,202,212 + ABZR87_RS05660 0.49 -0.8 1,202,212 + ABZR87_RS05660 0.49 -1.2 1,202,212 + ABZR87_RS05660 0.49 -0.9 1,202,213 - ABZR87_RS05660 0.49 +0.3 1,202,359 + ABZR87_RS05660 0.61 -2.4 1,202,365 + ABZR87_RS05660 0.61 +1.3 1,202,365 + ABZR87_RS05660 0.61 +0.5 1,202,365 + ABZR87_RS05660 0.61 -1.3 1,202,365 + ABZR87_RS05660 0.61 +0.3 1,202,366 - ABZR87_RS05660 0.61 -0.7 1,202,366 - ABZR87_RS05660 0.61 +0.5 1,202,366 - ABZR87_RS05660 0.61 +0.0 1,202,366 - ABZR87_RS05660 0.61 -2.1 1,202,532 + ABZR87_RS05660 0.75 +3.3 1,202,532 + ABZR87_RS05660 0.75 -0.0
Or see this region's nucleotide sequence