Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05260 and ABZR87_RS05265 are separated by 22 nucleotides ABZR87_RS05265 and ABZR87_RS05270 are separated by 69 nucleotides ABZR87_RS05270 and ABZR87_RS05275 are separated by 110 nucleotides
ABZR87_RS05260: ABZR87_RS05260 - MFS transporter, at 1,105,023 to 1,106,348
_RS05260
ABZR87_RS05265: ABZR87_RS05265 - 2-oxo-tetronate isomerase, at 1,106,371 to 1,107,159
_RS05265
ABZR87_RS05270: ABZR87_RS05270 - DUF3617 family protein, at 1,107,229 to 1,107,690
_RS05270
ABZR87_RS05275: ABZR87_RS05275 - winged helix-turn-helix domain-containing protein, at 1,107,801 to 1,108,643
_RS05275
Position (kb) 1106
1107
1108 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1105.384 kb on - strand, within ABZR87_RS05260 at 1105.384 kb on - strand, within ABZR87_RS05260 at 1105.384 kb on - strand, within ABZR87_RS05260 at 1105.384 kb on - strand, within ABZR87_RS05260 at 1105.426 kb on - strand, within ABZR87_RS05260 at 1105.426 kb on - strand, within ABZR87_RS05260 at 1105.426 kb on - strand, within ABZR87_RS05260 at 1105.444 kb on - strand, within ABZR87_RS05260 at 1105.444 kb on - strand, within ABZR87_RS05260 at 1105.452 kb on + strand, within ABZR87_RS05260 at 1105.452 kb on + strand, within ABZR87_RS05260 at 1105.452 kb on + strand, within ABZR87_RS05260 at 1105.453 kb on - strand, within ABZR87_RS05260 at 1105.453 kb on - strand, within ABZR87_RS05260 at 1105.453 kb on - strand, within ABZR87_RS05260 at 1105.458 kb on + strand, within ABZR87_RS05260 at 1105.458 kb on + strand, within ABZR87_RS05260 at 1105.612 kb on + strand, within ABZR87_RS05260 at 1105.815 kb on + strand, within ABZR87_RS05260 at 1105.815 kb on + strand, within ABZR87_RS05260 at 1105.815 kb on + strand, within ABZR87_RS05260 at 1105.815 kb on + strand, within ABZR87_RS05260 at 1105.815 kb on + strand, within ABZR87_RS05260 at 1105.816 kb on - strand, within ABZR87_RS05260 at 1105.816 kb on - strand, within ABZR87_RS05260 at 1105.816 kb on - strand, within ABZR87_RS05260 at 1105.816 kb on - strand, within ABZR87_RS05260 at 1105.816 kb on - strand, within ABZR87_RS05260 at 1105.926 kb on + strand, within ABZR87_RS05260 at 1105.926 kb on + strand, within ABZR87_RS05260 at 1105.927 kb on - strand, within ABZR87_RS05260 at 1105.927 kb on - strand, within ABZR87_RS05260 at 1105.927 kb on - strand, within ABZR87_RS05260 at 1105.927 kb on - strand, within ABZR87_RS05260 at 1106.055 kb on - strand, within ABZR87_RS05260 at 1106.062 kb on + strand, within ABZR87_RS05260 at 1106.062 kb on + strand, within ABZR87_RS05260 at 1106.062 kb on + strand, within ABZR87_RS05260 at 1106.062 kb on + strand, within ABZR87_RS05260 at 1106.062 kb on + strand, within ABZR87_RS05260 at 1106.063 kb on - strand, within ABZR87_RS05260 at 1106.063 kb on - strand, within ABZR87_RS05260 at 1106.063 kb on - strand, within ABZR87_RS05260 at 1106.063 kb on - strand, within ABZR87_RS05260 at 1106.191 kb on - strand, within ABZR87_RS05260 at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.223 kb on + strand at 1106.224 kb on - strand at 1106.224 kb on - strand at 1106.224 kb on - strand at 1106.224 kb on - strand at 1106.224 kb on - strand at 1106.224 kb on - strand at 1106.224 kb on - strand at 1106.224 kb on - strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.225 kb on + strand at 1106.226 kb on - strand at 1106.226 kb on - strand at 1106.226 kb on - strand at 1106.226 kb on - strand at 1106.226 kb on - strand at 1106.226 kb on - strand at 1106.226 kb on - strand at 1106.226 kb on - strand at 1106.226 kb on - strand at 1106.274 kb on + strand at 1106.274 kb on + strand at 1106.274 kb on + strand at 1106.274 kb on + strand at 1106.274 kb on + strand at 1106.274 kb on + strand at 1106.274 kb on + strand at 1106.275 kb on - strand at 1106.275 kb on - strand at 1106.275 kb on - strand at 1106.275 kb on - strand at 1106.275 kb on - strand at 1106.275 kb on - strand at 1106.275 kb on - strand at 1106.275 kb on - strand at 1106.342 kb on + strand at 1106.342 kb on + strand at 1106.343 kb on - strand at 1106.343 kb on - strand at 1106.343 kb on - strand at 1106.346 kb on + strand at 1106.346 kb on + strand at 1106.346 kb on + strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.347 kb on - strand at 1106.355 kb on + strand at 1106.355 kb on + strand at 1106.355 kb on + strand at 1106.355 kb on + strand at 1106.356 kb on - strand at 1106.356 kb on - strand at 1106.404 kb on + strand at 1106.404 kb on + strand at 1106.405 kb on - strand at 1106.405 kb on - strand at 1106.405 kb on - strand at 1106.483 kb on - strand, within ABZR87_RS05265 at 1106.483 kb on - strand, within ABZR87_RS05265 at 1106.483 kb on - strand, within ABZR87_RS05265 at 1106.618 kb on + strand, within ABZR87_RS05265 at 1106.696 kb on + strand, within ABZR87_RS05265 at 1106.696 kb on + strand, within ABZR87_RS05265 at 1106.734 kb on + strand, within ABZR87_RS05265 at 1106.734 kb on + strand, within ABZR87_RS05265 at 1106.734 kb on + strand, within ABZR87_RS05265 at 1106.734 kb on + strand, within ABZR87_RS05265 at 1106.734 kb on + strand, within ABZR87_RS05265 at 1106.734 kb on + strand, within ABZR87_RS05265 at 1106.735 kb on - strand, within ABZR87_RS05265 at 1106.735 kb on - strand, within ABZR87_RS05265 at 1106.735 kb on - strand, within ABZR87_RS05265 at 1106.735 kb on - strand, within ABZR87_RS05265 at 1106.735 kb on - strand, within ABZR87_RS05265 at 1106.752 kb on + strand, within ABZR87_RS05265 at 1106.908 kb on + strand, within ABZR87_RS05265 at 1106.908 kb on + strand, within ABZR87_RS05265 at 1106.956 kb on + strand, within ABZR87_RS05265 at 1106.956 kb on + strand, within ABZR87_RS05265 at 1106.956 kb on + strand, within ABZR87_RS05265 at 1106.957 kb on - strand, within ABZR87_RS05265 at 1106.957 kb on - strand, within ABZR87_RS05265 at 1106.957 kb on - strand, within ABZR87_RS05265 at 1106.957 kb on - strand, within ABZR87_RS05265 at 1107.067 kb on + strand, within ABZR87_RS05265 at 1107.068 kb on - strand, within ABZR87_RS05265 at 1107.068 kb on - strand, within ABZR87_RS05265 at 1107.092 kb on - strand at 1107.092 kb on - strand at 1107.230 kb on + strand at 1107.230 kb on + strand at 1107.230 kb on + strand at 1107.231 kb on - strand at 1107.231 kb on - strand at 1107.252 kb on - strand at 1107.263 kb on + strand at 1107.264 kb on - strand at 1107.264 kb on - strand at 1107.306 kb on - strand, within ABZR87_RS05270 at 1107.306 kb on - strand, within ABZR87_RS05270 at 1107.306 kb on - strand, within ABZR87_RS05270 at 1107.306 kb on - strand, within ABZR87_RS05270 at 1107.306 kb on - strand, within ABZR87_RS05270 at 1107.330 kb on - strand, within ABZR87_RS05270 at 1107.330 kb on - strand, within ABZR87_RS05270 at 1107.330 kb on - strand, within ABZR87_RS05270 at 1107.330 kb on - strand, within ABZR87_RS05270 at 1107.425 kb on + strand, within ABZR87_RS05270 at 1107.425 kb on + strand, within ABZR87_RS05270 at 1107.426 kb on - strand, within ABZR87_RS05270 at 1107.426 kb on - strand, within ABZR87_RS05270 at 1107.542 kb on - strand, within ABZR87_RS05270 at 1107.542 kb on - strand, within ABZR87_RS05270 at 1107.542 kb on - strand, within ABZR87_RS05270 at 1107.542 kb on - strand, within ABZR87_RS05270 at 1107.667 kb on + strand at 1107.667 kb on + strand at 1107.667 kb on + strand at 1107.667 kb on + strand at 1107.667 kb on + strand at 1107.668 kb on - strand at 1107.668 kb on - strand at 1107.668 kb on - strand at 1107.668 kb on - strand at 1107.668 kb on - strand at 1107.690 kb on + strand at 1107.690 kb on + strand at 1107.690 kb on + strand at 1107.690 kb on + strand at 1107.690 kb on + strand at 1107.690 kb on + strand at 1107.690 kb on + strand at 1107.691 kb on - strand at 1107.697 kb on + strand at 1107.698 kb on - strand at 1107.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 1,105,384 - ABZR87_RS05260 0.27 -0.6 1,105,384 - ABZR87_RS05260 0.27 +0.6 1,105,384 - ABZR87_RS05260 0.27 -1.8 1,105,384 - ABZR87_RS05260 0.27 +0.6 1,105,426 - ABZR87_RS05260 0.30 +0.6 1,105,426 - ABZR87_RS05260 0.30 -1.2 1,105,426 - ABZR87_RS05260 0.30 +1.1 1,105,444 - ABZR87_RS05260 0.32 +0.5 1,105,444 - ABZR87_RS05260 0.32 +0.5 1,105,452 + ABZR87_RS05260 0.32 +0.9 1,105,452 + ABZR87_RS05260 0.32 +2.8 1,105,452 + ABZR87_RS05260 0.32 +1.8 1,105,453 - ABZR87_RS05260 0.32 +0.4 1,105,453 - ABZR87_RS05260 0.32 +2.0 1,105,453 - ABZR87_RS05260 0.32 +0.5 1,105,458 + ABZR87_RS05260 0.33 +0.5 1,105,458 + ABZR87_RS05260 0.33 +1.1 1,105,612 + ABZR87_RS05260 0.44 -0.9 1,105,815 + ABZR87_RS05260 0.60 -1.7 1,105,815 + ABZR87_RS05260 0.60 -0.4 1,105,815 + ABZR87_RS05260 0.60 +0.3 1,105,815 + ABZR87_RS05260 0.60 +0.3 1,105,815 + ABZR87_RS05260 0.60 +0.6 1,105,816 - ABZR87_RS05260 0.60 +0.7 1,105,816 - ABZR87_RS05260 0.60 -1.0 1,105,816 - ABZR87_RS05260 0.60 -1.1 1,105,816 - ABZR87_RS05260 0.60 -0.5 1,105,816 - ABZR87_RS05260 0.60 +0.4 1,105,926 + ABZR87_RS05260 0.68 +0.8 1,105,926 + ABZR87_RS05260 0.68 +0.4 1,105,927 - ABZR87_RS05260 0.68 +0.6 1,105,927 - ABZR87_RS05260 0.68 -0.7 1,105,927 - ABZR87_RS05260 0.68 -0.0 1,105,927 - ABZR87_RS05260 0.68 +0.6 1,106,055 - ABZR87_RS05260 0.78 -0.0 1,106,062 + ABZR87_RS05260 0.78 +0.1 1,106,062 + ABZR87_RS05260 0.78 +0.0 1,106,062 + ABZR87_RS05260 0.78 -1.0 1,106,062 + ABZR87_RS05260 0.78 -0.2 1,106,062 + ABZR87_RS05260 0.78 +0.7 1,106,063 - ABZR87_RS05260 0.78 -2.2 1,106,063 - ABZR87_RS05260 0.78 +1.0 1,106,063 - ABZR87_RS05260 0.78 -2.1 1,106,063 - ABZR87_RS05260 0.78 +1.4 1,106,191 - ABZR87_RS05260 0.88 -0.6 1,106,223 + +0.2 1,106,223 + +0.9 1,106,223 + +0.0 1,106,223 + +0.0 1,106,223 + +1.0 1,106,223 + +0.3 1,106,223 + +0.6 1,106,223 + -0.7 1,106,223 + -0.7 1,106,223 + +1.6 1,106,223 + +0.8 1,106,223 + +1.8 1,106,223 + +0.3 1,106,223 + -1.6 1,106,223 + -0.7 1,106,224 - -0.5 1,106,224 - +0.3 1,106,224 - +0.3 1,106,224 - +0.2 1,106,224 - +0.9 1,106,224 - -0.2 1,106,224 - -0.2 1,106,224 - -0.2 1,106,225 + -1.0 1,106,225 + -1.0 1,106,225 + +1.4 1,106,225 + -0.1 1,106,225 + +0.2 1,106,225 + +1.8 1,106,225 + -1.0 1,106,225 + -0.3 1,106,225 + -0.5 1,106,225 + +0.6 1,106,226 - +1.1 1,106,226 - +0.7 1,106,226 - +0.9 1,106,226 - -0.7 1,106,226 - -0.5 1,106,226 - +0.1 1,106,226 - -0.1 1,106,226 - -0.3 1,106,226 - +0.4 1,106,274 + +0.9 1,106,274 + +0.2 1,106,274 + +1.4 1,106,274 + -0.2 1,106,274 + +0.4 1,106,274 + +0.0 1,106,274 + +1.4 1,106,275 - -2.4 1,106,275 - -0.2 1,106,275 - +0.9 1,106,275 - -0.1 1,106,275 - +1.6 1,106,275 - +0.9 1,106,275 - +1.6 1,106,275 - +0.3 1,106,342 + +0.9 1,106,342 + +0.8 1,106,343 - +0.4 1,106,343 - +0.0 1,106,343 - +0.2 1,106,346 + -0.1 1,106,346 + -1.1 1,106,346 + +0.6 1,106,347 - -1.8 1,106,347 - +0.2 1,106,347 - -0.4 1,106,347 - +0.9 1,106,347 - +0.7 1,106,347 - -1.0 1,106,347 - -1.0 1,106,347 - +0.6 1,106,347 - +1.5 1,106,347 - +3.2 1,106,347 - -0.8 1,106,347 - +0.3 1,106,355 + +1.2 1,106,355 + +1.0 1,106,355 + -0.1 1,106,355 + -1.0 1,106,356 - +0.2 1,106,356 - +0.0 1,106,404 + +1.1 1,106,404 + +0.4 1,106,405 - -0.4 1,106,405 - +0.1 1,106,405 - +0.2 1,106,483 - ABZR87_RS05265 0.14 -0.9 1,106,483 - ABZR87_RS05265 0.14 -1.8 1,106,483 - ABZR87_RS05265 0.14 +0.2 1,106,618 + ABZR87_RS05265 0.31 -0.6 1,106,696 + ABZR87_RS05265 0.41 -1.9 1,106,696 + ABZR87_RS05265 0.41 -0.2 1,106,734 + ABZR87_RS05265 0.46 -0.3 1,106,734 + ABZR87_RS05265 0.46 +0.6 1,106,734 + ABZR87_RS05265 0.46 +0.5 1,106,734 + ABZR87_RS05265 0.46 +0.0 1,106,734 + ABZR87_RS05265 0.46 -0.2 1,106,734 + ABZR87_RS05265 0.46 -0.0 1,106,735 - ABZR87_RS05265 0.46 -0.9 1,106,735 - ABZR87_RS05265 0.46 -0.6 1,106,735 - ABZR87_RS05265 0.46 -0.6 1,106,735 - ABZR87_RS05265 0.46 +0.2 1,106,735 - ABZR87_RS05265 0.46 -1.8 1,106,752 + ABZR87_RS05265 0.48 -0.1 1,106,908 + ABZR87_RS05265 0.68 +0.1 1,106,908 + ABZR87_RS05265 0.68 -0.5 1,106,956 + ABZR87_RS05265 0.74 +0.6 1,106,956 + ABZR87_RS05265 0.74 -0.5 1,106,956 + ABZR87_RS05265 0.74 +0.3 1,106,957 - ABZR87_RS05265 0.74 +0.7 1,106,957 - ABZR87_RS05265 0.74 -0.6 1,106,957 - ABZR87_RS05265 0.74 +0.0 1,106,957 - ABZR87_RS05265 0.74 -1.2 1,107,067 + ABZR87_RS05265 0.88 -1.3 1,107,068 - ABZR87_RS05265 0.88 -1.2 1,107,068 - ABZR87_RS05265 0.88 +0.2 1,107,092 - -1.3 1,107,092 - +0.7 1,107,230 + +0.2 1,107,230 + -0.8 1,107,230 + +0.1 1,107,231 - -0.8 1,107,231 - -0.2 1,107,252 - -3.3 1,107,263 + +0.0 1,107,264 - -0.2 1,107,264 - -0.6 1,107,306 - ABZR87_RS05270 0.17 +0.2 1,107,306 - ABZR87_RS05270 0.17 -0.3 1,107,306 - ABZR87_RS05270 0.17 +1.4 1,107,306 - ABZR87_RS05270 0.17 -0.5 1,107,306 - ABZR87_RS05270 0.17 +0.5 1,107,330 - ABZR87_RS05270 0.22 +0.8 1,107,330 - ABZR87_RS05270 0.22 -0.8 1,107,330 - ABZR87_RS05270 0.22 -0.3 1,107,330 - ABZR87_RS05270 0.22 -0.3 1,107,425 + ABZR87_RS05270 0.42 -1.0 1,107,425 + ABZR87_RS05270 0.42 -0.0 1,107,426 - ABZR87_RS05270 0.43 -1.1 1,107,426 - ABZR87_RS05270 0.43 +0.6 1,107,542 - ABZR87_RS05270 0.68 +0.5 1,107,542 - ABZR87_RS05270 0.68 +0.3 1,107,542 - ABZR87_RS05270 0.68 -0.3 1,107,542 - ABZR87_RS05270 0.68 -0.1 1,107,667 + +0.2 1,107,667 + +0.6 1,107,667 + +0.2 1,107,667 + +0.4 1,107,667 + +0.3 1,107,668 - -0.2 1,107,668 - +0.2 1,107,668 - +0.8 1,107,668 - +0.0 1,107,668 - +0.4 1,107,690 + +0.3 1,107,690 + +0.6 1,107,690 + +0.6 1,107,690 + +0.7 1,107,690 + -0.6 1,107,690 + +0.2 1,107,690 + +0.6 1,107,691 - -0.7 1,107,697 + +0.1 1,107,698 - -1.7 1,107,698 - +0.3
Or see this region's nucleotide sequence