Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05035

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05030 and ABZR87_RS05035 are separated by 491 nucleotidesABZR87_RS05035 and ABZR87_RS05040 are separated by 98 nucleotides ABZR87_RS05030: ABZR87_RS05030 - rod shape-determining protein, at 1,059,770 to 1,060,813 _RS05030 ABZR87_RS05035: ABZR87_RS05035 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC, at 1,061,305 to 1,061,604 _RS05035 ABZR87_RS05040: ABZR87_RS05040 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,061,703 to 1,063,190 _RS05040 Position (kb) 1061 1062Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1060.925 kb on - strandat 1061.042 kb on - strandat 1061.042 kb on - strandat 1061.042 kb on - strandat 1061.042 kb on - strandat 1061.042 kb on - strandat 1061.042 kb on - strandat 1061.089 kb on + strandat 1061.090 kb on - strandat 1061.093 kb on + strandat 1061.093 kb on + strandat 1061.093 kb on + strandat 1061.094 kb on - strandat 1061.094 kb on - strandat 1061.094 kb on - strandat 1061.094 kb on - strandat 1061.155 kb on + strandat 1061.155 kb on + strandat 1061.155 kb on + strandat 1061.155 kb on + strandat 1061.155 kb on + strandat 1061.155 kb on + strandat 1061.155 kb on + strandat 1061.155 kb on + strandat 1061.155 kb on + strandat 1061.156 kb on - strandat 1061.156 kb on - strandat 1061.156 kb on - strandat 1061.156 kb on - strandat 1061.160 kb on + strandat 1061.161 kb on - strandat 1061.161 kb on - strandat 1061.161 kb on - strandat 1061.162 kb on + strandat 1061.162 kb on + strandat 1061.162 kb on + strandat 1061.249 kb on + strandat 1061.697 kb on + strandat 1061.697 kb on + strandat 1061.697 kb on + strandat 1061.697 kb on + strandat 1061.697 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,060,925 - +3.8
1,061,042 - +2.4
1,061,042 - +0.5
1,061,042 - +2.2
1,061,042 - +2.0
1,061,042 - +0.1
1,061,042 - +0.6
1,061,089 + +3.0
1,061,090 - -1.0
1,061,093 + +3.3
1,061,093 + +4.6
1,061,093 + +3.6
1,061,094 - -1.9
1,061,094 - +0.1
1,061,094 - +2.1
1,061,094 - -1.2
1,061,155 + +3.8
1,061,155 + +3.8
1,061,155 + +3.8
1,061,155 + +3.3
1,061,155 + +4.5
1,061,155 + +3.0
1,061,155 + +2.6
1,061,155 + +4.2
1,061,155 + +2.9
1,061,156 - +0.4
1,061,156 - -1.0
1,061,156 - -1.3
1,061,156 - +0.7
1,061,160 + +2.9
1,061,161 - +0.2
1,061,161 - +1.4
1,061,161 - +1.8
1,061,162 + +2.7
1,061,162 + +0.9
1,061,162 + +1.8
1,061,249 + +1.7
1,061,697 + +0.2
1,061,697 + -0.1
1,061,697 + +1.2
1,061,697 + -0.4
1,061,697 + +1.2

Or see this region's nucleotide sequence